RNA id: TU265369


Basic Information

Item Value
RNA id TU265369
length 602
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G178876
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 1175879 ~ 1176615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATTCAAAGAGCTGGTTTATTTCATTGCTTCTGGGAAGGTAAACAGACACAGTGATTGAACTGCATAAACAGAAGTACAGGACTTTAACCTGGATATGACAACAAAATCATCTCAGCTCACCAGCAAACTACCCGTGTTCTTTCCACGTAAGATTATGATTGAATcgcacacactcaaacacacattcGGCATCTGTAGGGAATAATAAAGCTAATGCACATGTACTCCAGATTGTTTAGATGCTTCTAAAGGGAACAGTCTTTATATTCGactactgagagagagagagagagacaggacaGGTCCAGTCGTACCACTTGAATCATCTGCCTTAATTATTCATTATCTTTGCTACTTTAAATGTAGAAGCAAAATGCAATTAGAGCGACACCTCGTATGTAAATGTGTTAAGAACGGCTCCAGTCAGTGACCCCGGCAGCAGCCCGCGGTGGAGGAATTGCACTTGTGCAGTCAGCAGATTAGCGACCCTCAGCTCTTCTCGGATTTGCCTTTACGGACGCGCTTGTATTTGTCAACGTACGCTTTCACCAGGTTGGCCACCTTGTCGGCGTTCACCTCGCCACTTTTGCTGTGACAAAC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265361 lncRNA downstream 13033 1162287 ~ 1162846 (-) True G178868
TU265342 lncRNA downstream 36774 1129199 ~ 1139105 (-) False G178856
TU265335 lncRNA downstream 36774 1135490 ~ 1139105 (-) True G178856
TU265352 lncRNA downstream 47181 1127788 ~ 1128698 (-) True G178862
TU265332 lncRNA downstream 130434 1044382 ~ 1045445 (-) True G178853
TU265318 lncRNA upstream 4073 1180688 ~ 1183631 (-) False arid2
TU265379 lncRNA upstream 60778 1237393 ~ 1237952 (-) True G178884
XM_043230740.1 mRNA downstream 70506 1089815 ~ 1105373 (-) True tulp3
XM_043230741.1 mRNA downstream 70508 1089815 ~ 1105371 (-) False tulp3
XM_043230760.1 mRNA downstream 105436 1043383 ~ 1070443 (-) True ptn
XM_043230800.1 mRNA downstream 251619 914782 ~ 924260 (-) True mtpn
XM_043230799.1 mRNA downstream 251620 911904 ~ 924259 (-) False mtpn
XM_043230759.1 mRNA upstream 5355 1181970 ~ 1200891 (-) True arid2
XM_043230784.1 mRNA upstream 27101 1203716 ~ 1220286 (-) True gas2l3
XM_043230782.1 mRNA upstream 27101 1203716 ~ 1220285 (-) False gas2l3
XM_043230781.1 mRNA upstream 27101 1203716 ~ 1216077 (-) False gas2l3
XM_043230785.1 mRNA upstream 27101 1203716 ~ 1215741 (-) False gas2l3
TU265340 other downstream 36774 1135490 ~ 1139105 (-) False G178856
TU265345 other downstream 36774 1135490 ~ 1139105 (-) False G178856
XR_006248601.1 other downstream 251620 911904 ~ 924259 (-) False mtpn
TU265306 other downstream 285100 883253 ~ 890779 (-) False LOC122333240
XR_006248608.1 other downstream 421121 754625 ~ 754758 (-) True LOC122333264

Expression Profile