RNA id: XM_043230690.1


Basic Information

Item Value
RNA id XM_043230690.1
length 1963
RNA type mRNA
GC content 0.50
exon number 5
gene id rerg
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 432973 ~ 448981 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacgcacacgcacacacacacgcgcgcgctcACAGCGAATGTCTGCGCTCTCGCGCTCATCCACATCCTCGGATCTGATCGGACGCGAGTGTTTCTCACGGTGGATGATAATGCTGTCGCTACGGTGACTCCATCCgctctgtgattggctgcttCTGCGCGCGTCGTCATGGCGAAGAGTCCAGAGGTGAAGCTGGCCGTGTTTGGCCGAGCAGGAGTGGGAAAGTCAGctctGGTGGTTCGGTTCCTGACCAAACGCTTCATCTGGGAGTACGACCCTACACTtgAGTCCACCTACCGGCATCAGGCCAGCATCGATGACGAGACGGTCAGCATGGAGATCCTGGACACGGCCGGTCAGgAGGACGCGCTCCAGAAGGAGGGTCACATGCGCTGGGGTGACGGGTTTATCCTGGTGTATGACATCACGGACCGCGGGAGCTTCGAGGACGTGGCTCCTCTCAAGGGCCTCCTGGACGAGGTGAAGCGGCCCAAACACGTGCCGCTGGTTCTGCTGGGGAACAAGGCGGATCTGGAGCACGCCCGGCAGGTGGCCACGGAGGAGGGCGAGCGGCTGGCGGCCGACATGGCCTGTGCGTTCTACGAGTGCTCGGCGTGCTCGGATCAGGCGGGGACCGGCGGAGGCGTGGCGGAGGCCTTCCACGAGCTCTGCAGAGAGATCCGGCGCCGGCGAGCCGTTCAGGGCAAGACCCGCCGCCGGAGCTCCACCACACACGTCAAACAGGCCATCAACAAGATGCTGACCAAGATCAGCAGCTAGAGCTTCTCTGGATCTGTACGTCAGAGATCGGGAGGAGTGCGTTTCTTCACCAGATCTGGAGAAGCGTGTCTcggtaatggaagtgaatgggtgccgtcagaatgagagtctgataaaaacatcagtcaacatctggagaagatcaaactaatccacaTTTAAGATTTTAACTCAAATAGGAGTCTAactaaaaaaaacgtattatgGATTTTAATCAAAAGGTCTTAATGCTGGATGCTGCATGATTTAACAGAAGACCGCAGCGTCACACCTCATCTAACGTTAACCCACGCAGCTGTACGTCAGTCCAATAAACGCTTGTTAATATTGTGGATAATTGATGTTAATTAAGGGCCGCGTTTCTCCAGAGCTGATGAAGAAGCACACTCATCTTCATCTCAGGCGGCTCAACAACGAgcacatttccatttttggggaaagtattcctttaaaacgAGCGTCTGCCAGCAGGCCCAGAAAGAGAAACTCCTGGCAGATATTTGCGTAattttgatagatttttttcaggAAACAAGTCGCTTTGCTTCTGAAGAACATTATGCCCTGGAAAACAAGAAGTGTCCGTGTATTAGTTCCTGCAGCTGAAGGAGGATATTCCGAGGCGTTATCCCGCCGGAGATCTGACTCTGACTTCAAACGAGGATGGAATGCGTCCTGATGCTGATCTCGTGTGTCACAGGCGCAGGAACCTGTTTGAACCTCGTgcatatgaaaagaaaacatctgcCGGGTTGCTTTGGTCTCCTGGTTCGTCTGTAGTTGATATAAAACCCAAACATCGGTGCGAGAACTAGCCGAGCCGTTAACCCTGCGGCTTCCAGCGGCGTGATCAGATCATGAAACGGTTCATTCTGTTCATCTGCACGACTCAATCAGCAGAACACCTAGCTATCAGTCACTAGCGTAATGTTGATTTATAATATCAGTGCTTGCTGTAATTGATGTTCATGCATAGATGTTAATGaatacagaatgaaatgttCAAACGCATGTCTTTATATTTACTTCGGTCACCTGAAACtaaaaaatatctacaaaaatcttatttttattttagctagtaGTTTGAGATAACAAGGTAAATACTTCAGGTGCTGAAAAAGGTGAATGAACTAATCaatcagaaataataaaaactacacgtccgtataaaaaaa

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07855 RERG; Ras-related and estrogen-regulated growth inhibitor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264873 lncRNA upstream 637 430013 ~ 432336 (+) True G178549
TU264857 lncRNA upstream 23161 406511 ~ 409812 (+) True G178537
TU264714 lncRNA upstream 120927 223356 ~ 312046 (+) False G178434
TU264812 lncRNA upstream 180791 250318 ~ 252182 (+) True G178501
TU264733 lncRNA upstream 187155 245092 ~ 245818 (+) True G178450
TU264875 lncRNA downstream 7452 456433 ~ 457680 (+) True G178550
TU264891 lncRNA downstream 54230 503211 ~ 505537 (+) True G178557
XR_006248600.1 lncRNA downstream 104146 553127 ~ 554783 (+) False LOC122333249
TU264904 lncRNA downstream 105033 554014 ~ 558473 (+) True LOC122333249
TU264928 lncRNA downstream 188697 637678 ~ 638126 (+) True G178577
XM_043230712.1 mRNA upstream 36189 390952 ~ 396784 (+) False naga
XM_043230714.1 mRNA upstream 36189 390959 ~ 396784 (+) True naga
XM_043230715.1 mRNA upstream 43607 352079 ~ 389366 (+) True LOC122333200
XM_043230811.1 mRNA upstream 121772 310198 ~ 311201 (+) True ripply2
XM_043230755.1 mRNA upstream 234859 197814 ~ 198114 (+) True ost4
XM_043230724.1 mRNA downstream 20114 469095 ~ 479393 (+) True LOC122333209
XM_043230721.1 mRNA downstream 58421 507402 ~ 522540 (+) True etv6
XM_043230726.1 mRNA downstream 75376 524357 ~ 538556 (+) False LOC122333210
XM_043230727.1 mRNA downstream 75376 524357 ~ 538556 (+) False LOC122333210
XM_043230725.1 mRNA downstream 77324 526305 ~ 538556 (+) False LOC122333210
TU264814 other upstream 166245 264517 ~ 266728 (+) True G178503
TU264693 other upstream 218698 116245 ~ 214275 (+) True cunh11orf98
TU264696 other upstream 279758 150521 ~ 153215 (+) True dynlt1b
TU264685 other upstream 312362 116245 ~ 120611 (+) False cunh11orf98
TU264861 other downstream 2145 451126 ~ 456354 (+) True G178541
TU264903 other downstream 75330 524311 ~ 538878 (+) True LOC122333210
TU264989 other downstream 326431 775412 ~ 778365 (+) True crebl2
TU264990 other downstream 326431 775412 ~ 778365 (+) False crebl2
unassigned_transcript_2688 other downstream 350953 799934 ~ 800005 (+) True trnam-cau_120

Expression Profile