RNA id: XM_043230709.1


Basic Information

Item Value
RNA id XM_043230709.1
length 4906
RNA type mRNA
GC content 0.58
exon number 27
gene id ptpro
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 398388 ~ 430427 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGCGTCTCTGGCGCACGAGGCGCTTCGGGGGAGACGCGCACGAGGCGCCCACTAACGCTGCGCCCTAGTTAGGGAGCGCCGGAGACTTTGAGACGCGAGCAGAGACAGAAACCCGCTGCTGCGCTTCATTAGAGCCTCCGTGGGTCTCCATCATTCACCCGTCCCGCAGAGCCGAACCACAGACCCGACCGAGAGCGCACGGAACCGGCGGATGGACGCGGCGCTCGGCTTCTGACGGCGGAAGCTCCACTCGTTCCCCTTCGGCTCGGTTCGCGCTCCGCTCGCCCTTCGATCCGCTCGCTATTGTTCGGATGCGCGACGCTGGGAATCAAAGAGTCCGATCGATTCCCGACCGAACATGAGTCCTGCCTTCCGCTGGGTTTTATCGCCGTGCCTCATCGTCGCCAGCATCCTCGTTCAGaGCGCGGCTCCGTTCCAGGTGTCTCTGCAGGATGACAGCCGGATGCTGCTGTCGCTGGACGCTGATGACCTGAGGCCGGACGCTTCCGTGTATTCGGTGCGTGTTTCTGGAgagccgcacacacacacgcttctgTTCACGCCAGCCGCCGAGGGCCAGACGCTGCAGTTCAACGCCTCGTACCACGGCCTGTGTTACTCCATCAGCCTGATGCTCGGGAACCACAGCGCAGCGTCCAGAGCCGTCAGAACCATCCCTGTGCTGACCAagCCTCTTCCTCTAGACAGCGTTGAGATGTCTGATTACAGTCCGGCTCCAGAGACCGGTGTGGTGTTTCAGATCCGTTCTCCAGACAGGAACATCTACACACGAGTCAACATCAGCTACATGGAGGGCCATCAGCCACGCTACATGCTTTATAAAGACTTCCTGAAAGGAAAGACGGTGTTCAAGCACTGGCTGTCAGGCACGTGTTACACTAACATCAGCTTCCAGCTGATCTCTGAGGCCACGGTCAACAGGAGCACGCTGGTGAGCCGCAGCGACGTTACCCACGAGCCCCTGCGCCATCGCACTGtCCCGAATCCTCCTCTCAACGTGTCGCTAAAAATCGTTCACCTCAGCGGTCGAGGAGCGTCTGGATCCGACCTTCTGAAGGCGTCCCACAATGCATCGGTCCTCCGGCGGGCCCGTGACGTCCCTGCGGCTGaaggacaggaagaggaagtgaaCGGGGTGGAGATGGGCGTCACACAGACGCCACTTAACAACGTCACAGTTTATAGCAGCACGGCCGAACCCAACAGCACTGAGACGCGGTGGGCGGAGCCGACGGGAAGCCCCACCCCCaccgaggaggaggaggggttTGTGAACGCGCTGGTGCCAGAATACGAGGACTCCAATGAGCCGGGGTCAGCGATGGACGTGACCTTTGAGCCCAGTGTGATGCCCACGCCGCTGCCGCCGATCCTGCTGGAGCTGCGCTGGTTCCCGCCTCGGCCGCCCACCGTTTACGACGGGTTCAGCGTCTACGTCTACCGCGACGGAAACTGTACAGAAACGGCGACGGTGGATGAGAACACACACGAGTTCTTCACTGAGCTCTCAGAAGCAGGAACATACAGCGTTCAGATCACAACCCTGAGCTCATCTGGAGACTGTGAGCCCCGAGAGAGTTCAGAGCACCCCGGGTTCACCTTCTacctgactccGGCGGGGGAGTGGATGGAGCAGCCTCAGGAGCGTCCTCAGGCGGTGAGTGTGAAGATGCTGGACTCGAGCACGGCTGCAGTGTCGTGGGCTCCGTCTCGTCACAGATATAACGGCAGCCTGATCTCGGTGCTGTCTCTCACGTGTCTGCGGCCCAGCGTCAGCCAGCGCATGGAGAACACCTACTGCTCCGAGgagaaCATCACCAGTGACATCATCAGCAGCCTGACGCCCGGCGCTCAGTACAGAGTGGTGGTGTATCACACGAACGGCCCGCTGGTCAGCCCCGCGTCCGAACCGGTCATCATCGACATCGAGCCCACAGGTGTGCGTGATCTGGTGGTTTATCCGCTCAGTCCCAGCGCCGTCATCCTCAGCTGGCAGCGGCCGTACAACGTGGCCTTCAGAAAGTACGTCCTGCAGACCTTCTTCTTCAACTCGGCCACGCAGACGTCTCAGTGGACGACTTACTACGAGATCGCCGCCACCGCGTCCGTCATCGCTTCTGTGAGAGTGACCGATCTGCTGCCGGCCTGGTTCTATAAGTTCCGCGTGACGATGGTGACGTGGGGCGAGCCGGCGCTGAGCTGCTGCGACGCTTCTACCGTCAGCTTCGTCACAGCTCCTGAAGCCCCTCACATCTCGTCGGTGGACTACGCTCACGGGACGCTGTTTGTGCGCTGGACGTACGGCGATCTCTTCACGGACCTCTCTCACTCCCGCATGCTGCACTGGCAGCTGAGCGCCGAGGGGAAGAAGGGCTCGAGGAGACGCTACTCCATGGACGTGACTCGTAACATGATGAAGGCATCTCTGACTCTTCCTCCGGGAGACATCTACAACCTGACGGTGTCGGCCTGCACCGAGAGGAGCCGCAACACGTCTGCGCCGCACATCATCAAACTCGATCCGGCTCCTCCGAAGGCGCTTTACGCTCTCAACGCCACCGACACGGCCGTCACGCTGCTCTGGACGGAGGAAGGCGTCGTGGACTTCTACCAGATCGCCTGCAGACCGCTGGGAGTCATCAGAGAGAGCAAAAAGGTGCGAGAGCCGCTGCTGACCGCCGCTCATGTAGTGACCGTGTCTGGACTGCAGCCGTCCACTTCCTATAACTGTACTGTGGTCAGCAGCAGCTACAGCAGCGTCAGTGACCCGGCGTTCATCAGCGTCAGCACGGCCGtgCGTGAGATGAACCCGAGCGTGGCAGCGATCTCTGCTCTGGCGGTCCTCAGTGTTCTTCTCATCAGTCTTCTGGTTCTGTTTCTGCTGGTTCTACGTAAGAAACACATGGATCTGAGTCGGGAATGCGGCGCCGAAACCTTCGTGAATTTCGCCTCTTTCGAGCGAGACGGGAAGCTGCCGTATAACTGGCGCAGGAGTCTCTTTGCGTTCCTCACGCTTCTGCCATCCTGCCTTTGGACTGACTATCTTTTGGCCTTTTATATTAATCCGTGGAGCAAGACGGCGCTGAAGAAGAGGAAACTAACCAGTCCCGTTCAGCTCAGCGATTTCGACGCGTACATCAAAGACATGAGCAAGGACTCTGCGTACAAGTTCTCGCTGCAGTTCGAGGAGCTGAAGAGCGTCGGTCTGGATCTGTCTCACGAAGCGGCCGACCTGCCCGTCAACAGACCCAAGAACCGCTACACCAACATCCTGCCCTATGATTTCAGTCGAGTGAAGCTGATCTCTCTGCACAACGATGAAGGCTCTGATTACATCAATGCCAACTATATTCCTGGTTATAATTCCCCGCATGAGTTCATCGCCACACAGGGGCCGCTGCCCGAGACCAGGAACGATTTCTGGAAGATGGTCCTGCAGCAGAAGTCTCACATCATCGTCATGCTGACCCAGTGTAACGAGCGCAGGAGGGTGAAGTGTGACCACTACTGGCCCTTCACAGAGGAGCCCGTGGCGTACGGAGAGATCACCGTCGAGATGCTCTCTGAGAGCGACTCGCCCGAGTGGACCGTCAGAAACTTCAGACTGGGATACGCTGATGAGACTCAAGACGTTCTGCACTTTAACTACACCTCGTGGCCGGATCACGGCGTGCCCACGGTCAACGCCATCGAGAGCATCTTACAGTTCGTTCAGATCGTCCGGCAGCAGGTCAACAGGACCAAAGGGCCCATCGTGGTCCACTGCAGtgctgGAGTGGGCCGCACCGGCACCTTCATTGCTCTGGACCGGCTGATGCAGCACATTCAGGAACACGAGTACGTGGACGTCTTGGGCCTGGTGTCAGACATGCGCTCGCATCGGCTCTCCATGGTCCAAACAGAGgagcAGTACGTGTTCATCCATCAGTGTGTCCTCCTTATGTGGAAAAAGAAGAAGCAGCAGACGCACACGAGCGACGTCATCTACGAGAACGTCAGCAAGTCCTAATGAAGTCTGGCGCTCCTCTCAGTGTTGACAGACGTGTTTCATCGAGCGGCGGCGCCGAGGAGAACCTTCACTCATCTACTCCCATACAAGCTCTTATTTAGCGGACGAACCACGGAACCAATCCGATGCCTTAAACGAGCTGCCGTGTTCTCGCCGAGCGCAGGAGGACGCCGCTTCCGTCCGCATCTCGTCTGtagagagtgtgtgcgtgtgtgtgtgtgcgtgtgtgtgtgaatctcaGGATCATCTGGATGCGTGTAAAGtgtgtttcgtgagtttatagCGCACTCTGTCTGTACTAGTGTTAGTTTTACGTCTCCAGAGGAGAATGAAGAACCGGATCCTCCTGTTGGCATGCACATGTAAGCACGGTTCGACCCTGACGGCCTTTAATCACTGCCACACACAGACCATCCGCTTCGGGTGTAGAGGACAGATCCGTGTAGCTGTGTGTAGAGAGGCTGCGCTTCTGTGCTTTCTGCTGTTCTCTGGAGCGGAGAGAAGCGCTCGCTGCTGCTGAATCTGACACCGATGCATGCTGCAAAAAGACAGACGCCAGATTAGTCTCATCTTTAGGTTTAGACTCCAGCTCCGAGTGTTCGTTTCACGTTTGCCCGTCCCGTCGGTGACTTTACAGAGATGTAATATCAGCGTAAGCGTCGAGCTGTAGATACCGGAACTCTGACTCGAACAGAACGGGCTTCACTCGATGGCTTTTCTTTGGTTTGTGTCAGAACTCGTTCGTCTTTTGGTGCCATTCTTGTGTATCGTGTGACTTCAAGTAGAAGAGCAGTCCACAGTCGCCATCACAAGTTTAACATGTGttcatttggggaaaaaaaaaaataaacgtttgaGTACGTATTCCTATAAA

Function

GO:

id name namespace
GO:0021587 cerebellum morphogenesis biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18035 PTPRO; receptor-type tyrosine-protein phosphatase O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265184 lncRNA downstream 7084 361967 ~ 391304 (-) True G178746
TU265180 lncRNA downstream 9017 382302 ~ 389371 (-) True LOC122333201
TU265181 lncRNA downstream 9017 384755 ~ 389371 (-) False LOC122333201
XR_006248598.1 lncRNA downstream 12272 383687 ~ 386116 (-) False LOC122333201
TU265158 lncRNA downstream 153379 243215 ~ 245009 (-) False dpysl5b
TU265203 lncRNA upstream 27627 458053 ~ 520366 (-) False G178757
TU265178 lncRNA upstream 47767 478193 ~ 480561 (-) True G178742
TU265200 lncRNA upstream 84390 514816 ~ 517976 (-) False G178757
TU265235 lncRNA upstream 109633 540059 ~ 540286 (-) True G178779
TU265236 lncRNA upstream 115061 545487 ~ 545785 (-) True G178780
XM_043230716.1 mRNA downstream 68786 317759 ~ 329602 (-) True sim1b
XM_043230718.1 mRNA downstream 88739 303576 ~ 309649 (-) True mrap2b
XM_043230790.1 mRNA downstream 98571 273623 ~ 299817 (-) True crybg1b
XM_043230717.1 mRNA downstream 138723 245078 ~ 259665 (-) True sobpb
XM_043230793.1 mRNA downstream 155299 230412 ~ 243089 (-) True dpysl5b
XM_043230719.1 mRNA upstream 25251 455677 ~ 505570 (-) True LOC122333205
XM_043230798.1 mRNA upstream 124083 554509 ~ 569266 (-) False zgc:165507
XM_043230797.1 mRNA upstream 124083 554509 ~ 569230 (-) True zgc:165507
XM_043230794.1 mRNA upstream 186897 617323 ~ 622893 (-) True fbxo7
XM_043230795.1 mRNA upstream 186897 617323 ~ 622840 (-) False fbxo7
TU265167 other downstream 61774 307212 ~ 336614 (-) True G178734
TU265160 other downstream 143546 251477 ~ 254842 (-) False sobpb
TU265156 other downstream 155309 237056 ~ 243079 (-) False dpysl5b
TU265131 other downstream 162636 223349 ~ 235752 (-) True G178709
unassigned_transcript_2687 other downstream 185390 212911 ~ 212998 (-) True trnay-gua_46
TU265205 other upstream 78846 509272 ~ 520366 (-) False G178757
TU265206 other upstream 85291 515717 ~ 520366 (-) True G178757
XR_006248609.1 other upstream 323325 753751 ~ 753886 (-) True LOC122333265
XR_006248608.1 other upstream 324199 754625 ~ 754758 (-) True LOC122333264
TU265306 other upstream 452827 883253 ~ 890779 (-) False LOC122333240

Expression Profile