RNA id: XM_043230712.1


Basic Information

Item Value
RNA id XM_043230712.1
length 1773
RNA type mRNA
GC content 0.55
exon number 9
gene id naga
representative False

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 390952 ~ 396784 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caaacaacacacacacacacacacacacacacacacacactctctctctctcacacacacacacactcagacagacagacagacagaactgTGCTGAGCAGCAGAACCGAGCCGCTCGCGTCTGATTCAGAAACCGAGGGAAGATCCAACATCCGGATCCGAAATGCAGCGGTCAGCGGTGGTTTTTGTTCTGGCGTTCTCGGCGGCCGCCTGGGCTCTGGATAACGGGCTGATGAGGACCCCGCCGATGGGCTGGTTAGCCTGGGAGCGTTTCCGCTGTAACACGGACTGTCTGAACGACCCGGACAACTGCATCAGCGAGAAGCTGTTCATGGACATGGCCGACCGGCTGTCGGAGGACGGCTGGAGAGAGCTGGGATACGTCTACATCAACATCGACGACTGCTGGTCCTCGAAGCTGAGAGACGGTCAGGGCCGACTGCAGGCCGACCCCAAGAGGTTTCCGCGGGGCATCCCTCACCTGGCGCAGTACGTCCACGACCGCGGCCTGAAGCTGGGCATCTACGGAGACATGGGCACCTACACCTGCGGAGGATATCCAGGAACCACTCTGGACAAGATCGAGACGGACGCCCAGACCTTCGCTGACTGGGGCATCGACATGCTGAAGCTGGACGGATGCTACTCCAACTCATCGTACCAGGAGCAAGGCTACCCAATGATGTCAAAGGCCCTGAACGCTACGGGCCGTCTCATTGGCTACTCCTGCAGCTGGCCCGCCTACCAGGGTGGCCTCCCGCCGAAGgtgaaCTACTCTCTTCTGGGTGAGATCTGTAATCTGTGGAGGAACTACGATGATATCCAGGACTCGTGGGACAGTGTTCTGAGCATCGTCGACTGGTTCTTTGATAATCAGGACGTTCTGCAGCCCGCCGCCGGACCGGGACGCTGGAACGACCCCGACATGCTGATCATTGGAGACTTCGGCCTCAGCATGGACCAATCACGTGCTCAGATGGCGCTGTGGGCGATCATGGCCGCCCCTCTCTTCGTGTCTAACGATCTCCGTACGGTCAGCAGCGGCGCTCGAGCGATCCTGCAGAACAAGATGGCCATCGGCATCAATCAGGACCGGCTGGGCATCCAGGGCAGACGTCTGCTCAAGGAGAAGAGCGGGGTCGAGGTGTTCTGGAGGCCCCTGGCCAAAGGCTCCAGCGCTCTGGTGTTCTTCAGCAGGAGATCTGATATGCCTTATCGCTATACAACCTCTCTGAAGGAGCTGAGCTACAAAACTGGAGTGTATGAGatgtaCGACGTGTTTTCGGAgcagctcctgcctcaggtgaaGGACAGCACAGAGTTTGTGGTGTCCATCAATCCGTCCGGGGTGGTCATGTGGTACGTCAGTCCTGTGGCCAAGTGGCAGAAGGAGGCGGAGCCTAGGCACTTCAGTGAGAAGCTGACTGGGCCAAAGTTCCACCAGCATGCAAATGAGGTCGACGCCCCTCTGGTGCTCTGAGCTCCGCCCACCAGAATCCAACGACACACTCAGGGATCTTTAGCCAATCGAATGTGCCTACGATCATTTGATCAGCTTTCCAAATGTTTTCTAGTGTAATTTTATAGCTCCATTTCTACTGAATGACACGGGATGGgattgaatgtgtttttgcactGACTTTAACGAGGTCTCATTTGTGCACATTCAAGTTTGAAGTCCTTTTATAAATCAAGATGTTCAAATTATGATGCTTTTGTGGAGGTGTACTACAGTTTTTGAACTCAAATAAACACTTGATCTAAATGACAGAA

Function

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0016139 glycoside catabolic process biological_process
GO:0046477 glycosylceramide catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008456 alpha-N-acetylgalactosaminidase activity molecular_function
GO:0004557 alpha-galactosidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264714 lncRNA upstream 78906 223356 ~ 312046 (+) False G178434
TU264812 lncRNA upstream 138770 250318 ~ 252182 (+) True G178501
TU264733 lncRNA upstream 145134 245092 ~ 245818 (+) True G178450
TU264809 lncRNA upstream 146031 243417 ~ 244921 (+) True G178499
TU264719 lncRNA upstream 150560 239917 ~ 240392 (+) True G178437
TU264857 lncRNA downstream 9727 406511 ~ 409812 (+) True G178537
TU264873 lncRNA downstream 33229 430013 ~ 432336 (+) True G178549
TU264878 lncRNA downstream 50225 447009 ~ 457680 (+) False G178550
TU264875 lncRNA downstream 59649 456433 ~ 457680 (+) True G178550
TU264891 lncRNA downstream 106427 503211 ~ 505537 (+) True G178557
XM_043230715.1 mRNA upstream 1586 352079 ~ 389366 (+) True LOC122333200
XM_043230811.1 mRNA upstream 79751 310198 ~ 311201 (+) True ripply2
XM_043230755.1 mRNA upstream 192838 197814 ~ 198114 (+) True ost4
XM_043230697.1 mRNA upstream 211570 177463 ~ 179382 (+) True mrps10
XM_043230809.1 mRNA upstream 238270 150451 ~ 152682 (+) False dynlt1b
XM_043230690.1 mRNA downstream 36189 432973 ~ 448981 (+) True rerg
XM_043230724.1 mRNA downstream 72311 469095 ~ 479393 (+) True LOC122333209
XM_043230721.1 mRNA downstream 110618 507402 ~ 522540 (+) True etv6
XM_043230726.1 mRNA downstream 127573 524357 ~ 538556 (+) False LOC122333210
XM_043230727.1 mRNA downstream 127573 524357 ~ 538556 (+) False LOC122333210
TU264814 other upstream 124224 264517 ~ 266728 (+) True G178503
TU264693 other upstream 176677 116245 ~ 214275 (+) True cunh11orf98
TU264696 other upstream 237737 150521 ~ 153215 (+) True dynlt1b
TU264685 other upstream 270341 116245 ~ 120611 (+) False cunh11orf98
TU264861 other downstream 54342 451126 ~ 456354 (+) True G178541
TU264903 other downstream 127527 524311 ~ 538878 (+) True LOC122333210
TU264989 other downstream 378628 775412 ~ 778365 (+) True crebl2
TU264990 other downstream 378628 775412 ~ 778365 (+) False crebl2
unassigned_transcript_2688 other downstream 403150 799934 ~ 800005 (+) True trnam-cau_120

Expression Profile