RNA id: XM_043230760.1


Basic Information

Item Value
RNA id XM_043230760.1
length 1361
RNA type mRNA
GC content 0.44
exon number 5
gene id ptn
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 1043383 ~ 1070443 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTCTCACAGACACCATTAGCACGGCTCTGTGGTGGAAATAGAGCGctagagataaagagagagagagacaggaggatcaaaagaaaaacaaagagggCAAACAGGTGGAATTAGGAAGAGAAACAGCAAACTATTCCTCAGACTACAGcatgcagcaGCAGTGGGTGTGTGTGGCTCTACTGGCCCTCCTGACTGTCACAGTGACGCTGGCAGATGGtggaaaaacagagaaacaagGTAAGAAGGAGCGTAAATCGGACTGTGGCGAGTGGCAGTGGAGCGTGTGTGTGGCTAACGAGGGTGACTGCGGCCTGGGCACCAGAGAGGGCACTCGCACCGGCACCGACTGCAAACAGACCATCAAAACCCAGCGCTGCAAAATCCCCTGCAACTGGAAAAAGCAGTTTGGAGGCGAGTGTAAGTACGACTTTGAAGCGTGGGGTGAGTGTGACTCCACCACGGGGATGAAGACGCGCACCGGTGTGCTAAAGAGAGCGCTGATGGACGCTAGCTGCCCGAACTCCGTCAGCGCCACCAAACCCTGCGGAAAACCCAAGACCAAGATACAAGATTCTCAGAAACCAAAACGGGAAGGAAAGAAGAAGGAGCGGAACCCGACGGACTAGAAGCCGCTCTCTTCTGCTCCTCAGGCAGACGTGGATGAGGCCGCATACTATTTACAGTAGAATATTTTTAGATTGTTTGTAGCTTTAAATTACGGCTCACAGAATAATACATGAATGATGAAAGAAACAAACGAATTACTAATATCTCCCGCTGAATCCTCTAACGCTGTATCAGACCGCCCCGTTCACACAGACATGTTCTGAGAACGCTTTTCTAACGTTCCCGTTAGGTTGTGAAAAGGTTATTTCTGAATTAACTCTAAACATCCCAAACATCCAGTTTTAAGACGGTTATGCGGATGCGAGGGGATTGTTACGTTTGATCATGAAAACATTCCAGAAAACTCTGAAAGAACGTTCTGTTAACGTTTCTTGAACTTCAGCCGTGTTTGCTGGCCGCTTGGACGTCACaggtgaataaaatcatgcatcaTTGTATTTCATGAAATGTCCTCATCAAACACGATGGGAATTCAAATTTGGATTGTAATTGATGAACAGAAAAGTAATACTCCTTAAAAGTAATGTGGAATTAAAATGGGATCTACTAAACACAACAAATGTTCAAAAGATGTTTCTGAAATATTCTATGCCTAGAGCGTATTTATGGATAATAcgggaaataaataaagcatcgGTTAAAAGTTGTACACGGTTctaattcatttcaaattgtATAAAATTCTACTTCTCTGCTGgagaatgaaataaagttaAACTAGAGTTAAACTAA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K16642 PTN; pleiotrophin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248607.1 lncRNA downstream 21220 974052 ~ 1022163 (-) False LOC122333259
XR_006248606.1 lncRNA downstream 39128 974051 ~ 1004255 (-) True LOC122333259
XR_006248605.1 lncRNA downstream 58702 959497 ~ 984681 (-) False LOC122333259
XR_006248604.1 lncRNA downstream 58702 974057 ~ 984681 (-) False LOC122333259
TU265254 lncRNA downstream 96860 856479 ~ 946523 (-) True G178791
TU265352 lncRNA upstream 57345 1127788 ~ 1128698 (-) True G178862
TU265342 lncRNA upstream 58756 1129199 ~ 1139105 (-) False G178856
TU265335 lncRNA upstream 65047 1135490 ~ 1139105 (-) True G178856
TU265361 lncRNA upstream 91844 1162287 ~ 1162846 (-) True G178868
TU265369 lncRNA upstream 105436 1175879 ~ 1176615 (-) True G178876
XM_043230800.1 mRNA downstream 119123 914782 ~ 924260 (-) True mtpn
XM_043230799.1 mRNA downstream 119124 911904 ~ 924259 (-) False mtpn
XM_043230787.1 mRNA downstream 152679 881458 ~ 890704 (-) True LOC122333240
XM_043230761.1 mRNA downstream 162358 860592 ~ 881025 (-) True upf2
XM_043230762.1 mRNA downstream 162358 862614 ~ 881025 (-) False upf2
XM_043230740.1 mRNA upstream 19372 1089815 ~ 1105373 (-) True tulp3
XM_043230741.1 mRNA upstream 19372 1089815 ~ 1105371 (-) False tulp3
XM_043230759.1 mRNA upstream 111527 1181970 ~ 1200891 (-) True arid2
XM_043230784.1 mRNA upstream 133273 1203716 ~ 1220286 (-) True gas2l3
XM_043230782.1 mRNA upstream 133273 1203716 ~ 1220285 (-) False gas2l3
XR_006248601.1 other downstream 119124 911904 ~ 924259 (-) False mtpn
TU265306 other downstream 152604 883253 ~ 890779 (-) False LOC122333240
XR_006248608.1 other downstream 288625 754625 ~ 754758 (-) True LOC122333264
XR_006248609.1 other downstream 289497 753751 ~ 753886 (-) True LOC122333265
TU265205 other downstream 523017 509272 ~ 520366 (-) False G178757
TU265340 other upstream 65047 1135490 ~ 1139105 (-) False G178856
TU265345 other upstream 65047 1135490 ~ 1139105 (-) False G178856

Expression Profile