RNA id: XM_043230761.1


Basic Information

Item Value
RNA id XM_043230761.1
length 4962
RNA type mRNA
GC content 0.55
exon number 22
gene id upf2
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 860592 ~ 881025 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attttttttcctctcgaTCGGGCACCTTTGGGGACGCCAAATCCAGGGGTCCTAATATTGAAAACTATCAAGCGCCGTCATTTACAGACTAAACTTATGAATATTAACACAAGCACATGAGTAGCAGTATGCCTGCTGAACGTAAGAAGCCTGTCAAcatggaggagagagagacggccTCCTTCGGGAACAAAGACAGAGATGCAGACAGACAGGCCGCCGCATCCCGAGACAAGAGCAAAGACGACTCCAAGATGAGCGGAAAGAAGGACGGAGGCAAGACGGCGGACGAGAAGAAGAGACGGGCTGAGGAGGACAAGAGGAAGAAGGAGGAGAGGGAGCgaaagaagaaagaggaggagaagcAGAGGGCAGAGgaggagcagaagaagaaagaggaggaggagaagagacagcaggaggagcaggagaagaagctCCTGGAGGAGGAAGCCAAACgacagaaagaggaagaggcTGCACAGCTCAAGGAGAAGGAGGAAGCCGAGCAGCTCCAGCAGGAGGCCTGGGAGCGTCACCACGGCCGGAAAGAGCTTCGAGCCAAGAACCAGCACGCCCAGGAGATGCGTCCCGAGGAGGCCTTCTTCAGCCGCCTGGACTCCAGCCTGAAGAAGAACACGGCGTTCGTCAAGAAGCTCCGCACGCTCACCGAGCAGCAGCGCGCCTCGCTCTCGCAGGACTTCGACTCGCTCAACCTCAGCAAGTACATCGGCGAGGCCGTGAGCTCCATGGTGGAGGCCAAGCTGAAGATCTCAGACGTGGGCTGCGCCGTGCAtctctgctctctcttccacCAGCGCTACGCCGACTTCGCTCCGCTCCTCCTCGCCGCCTGGAAGAGGCACTTCGAGGCCAGGAAGGAGGAGAAGGCGCCCAACGTCAGCAAGCTGCGCACCGACCTGCGCTTCATCGCCGAGCTCACCATCGTGGGTCTGTTCACGGACAAAGAAGGCCTGTCGCTCATCTACGAGCAGCTGAAGAACATCATCGGCGCCGACCGGGAGACGCACACTCACGTGTCCGTCATCATCAGCTTCTGCAAGCACTGCGGAGACGATATCGCCGGGCTGGTGCCGAGGAAGGTCAAGAACGCCATGGAGAAGTTCGGCCTGTCCTTCCCTCCCAGTCAGATCATCAACGCGGAGAAGCAGCAGCCGTTCCAGAACCTGCTGAGAGAGTACTTCACCTCCCTCACCAAACACCTGAAGAAAGACCACCGAGAGCTGCAGAACATCGAGAGGCAGAACAGGCGCATCCTTCACTCTAAAGGAGAGCTGAGCGAGGACAGACACAAGCAGTACGAGGAGTTCGCCACCTCCTATCAGAAGCTGCTGGCAAACACACAGACGCTGGCCGATCTCCTGGACGAGAACATGCCGGAGCTTCCTCAGGACAAAACCGTCCAGGAAGAGCACGGCCCGGGCATCGATATCTTCACGCCGGGGAAACCGGGAGAGTATGATCTGGAAGGAGGGATCTGGGAGGACGAGGACGCGCGAAACTTCTACGAGAACCTGGTGGATCTGAAGGCGTTTGTACCCGCTATCCTCTTCAAGGACAACGAGAAGAGCGGCCAGACCGGCAAAGAAGGACGAGAGGGAAACAGCACTGAGGAGTTGGAGATGGAGTTGGAAGCGCTGGACATCACCGATGAGCCGATCGATCTGGACACAGCCGACGAGAATGAAAGTGAAGAACTGGCCAAAAAGATACTGGATGAGCAAGagcaggaggatgaggaggccAGCACCGGCTCTCATCTCAAACTCATCGTGGATGCTTTCATCCAGCAGCTCCCAAACTGCATCAACAGAGATCTGATTGACAAGgctGCTATGGACTTCTGTATGAACATGAACACAAAGTCTAATCGCAGGAAGCTGGTTCGAGCTCTTTTCACGGTGCCCagacagagactgGATCTGTTGCCGTTCTACGCTCGTCTGGTGGCCACTCTGCATCCATGTATGTCTGACGTAGCTGAAGACCTTTGCTCGATGCTCAAAGGAGATTTCAGATTTCATATCAGAAAGAAGGACCAAATCAACATTGAGACCAAGAATAAGACGGTGAGGTTCATCGGGGAGTTGGCCAAGTTCAAGATGTTTTCCAAAACGGACACACTGCACTGCCTCAAGatGCTGCTGTCTGATTTCTCTCACCATCACATCGAGATGGCCTGCACGCTGCTGGAGACATGTGGACGTTTTCTCTTCCGCTCACCGGACTCTCATCTGCGCACGAGCGTCTTACTGGAGCAAATGATGCGTAAGAAGCAGGCTCAGCATCTGGATGTGCGTTACGTGACGATGGTGGAGAACGCCTATTACTACTGCAACCCTCCGCCGATGGAGAAGACGGTGCGCAGGAAGAGGCCTCCGCTGCAGGAGTACATCCGTAAACTCCTCTACAAAGACCTGTCCAAGGTCACCACGGAGAAGGTGTTGAGGCAGATGAGGAAGCTTCCCTGGCACGACCCCGATGTGAAGAGTTACCTGATCTGCTGCATGATCAACATCTGGAACGTCAAATACAACAGCATCCACTGCGTGGCCAACCTGCTGGCCGGTCTGGTGGCGTATCAGGAGGATGTGGGCATTCATGTGGTGGACGGCGTGCTGGAGGACATCCGCCTCGGcatggagGTGAACCAGCCCAAGTTTAACCAGCGGCGCATCAGCAGCGCTAAGTTCCTGGGCGAGCTGTATAACTACCGCATGGTGGAGTCTGCGGTCATCTTCCGCACGCTCTTCTCCTTCACCTCGTTCGGCGTGAGCACGGACGGCTCTCCCAGCCTGCTGGACCCGCCCGAGCACCTGTTCCGCATCCGTCTGGTCTGCACCCTGCTGGACACCTGCGGCCAGTACTTCGACCGCGGCTCCAGCAAGAAGAAGCTCGACTGCTTCCTCATTTACTTCCAGAGGTACGTCTGGTGGAAGAAGAGTCTGGATGTGTGGACTAAAGAGCAGCCGTTCCCCATCGACATCGAGTACATGATCACAGACACGCTGGAGCTGCTGCGGCCCAAAATGAAGCTGTGCTCGTCTCTGGATGAGGCCTGTGCTCAGGTCACACAGCTGGAGAGAGAGTTCCTCGTCAAGCTCGGCCTGGAGAAAGACGGCCGCTCCTCCAGCGCCATGGGCGAGAACGAGCCTCTGGACGAGGAGGATGACGACGATGAAGACGAGGGAGGAGCCGAGACCGAGGAGCAGTCTGGAAACGAGAGCGAGATGAATGAACCCGAGGAGGAGGAGGCCTCCGACAACGAAGAAGAGGAGcgtgaggaggaagaggagaacaCGGACTACCTGACCGACTCCAACAAAGAGAACGAAACGGATGAAGAGAACAACGAGGTCACCATCCGCGGCGGAGGACTCAAACACGTGGCCTGTGCCGAGGACGAGGACTTCATCCAGGCCCTGGACAAGATGATGCTGGAAAACCTGCAgcagCGCAGTGGAGAGGCCGTGAAGGTCCATCAGCTGGACGTGGCCATTCCTCTTCAGTTAAAGAGTCAGCTGAAGAAGAGCTCAGCCCCGTCCTGCGCCGCAGACACAGACGCAGACATCAGCGACACCATGCAGTTCGTCATGCTCACTCGCAAGGGCAACAAACAGCagtttaagATCCTGAACGTGCCGCTGTCGTCTCACCTGGCGGCGAATCACTTCAACCAGCAGCAGGCGGAGCAGGAGGAGCGCATGCGCATGAAGAAGCTGACGCTGGACATCAACGAGCGGCAGGAGCAGGAGGACTACCAGGagatgATGCAGTCTCTCGCTCAGAGACCCGCTCCAGCAAACACCAACAGAGAGCGCCGCCCCCGATACCAGCACCCCAAAGGAGCGCCCAACGCAGACCTCATCTTCAAGACCGGCGgcagGAGACGCTGATGATGTCAGACCGAGCAAACGACGAGTCAAAGACAGCAAAGAGAGACACGGAGAGATGGACAGCGGTGCTGCTCTGGGATGGAGACACACCCACCTGACTGCAGCGTCACCACGGCAACCAGACCAGCCGCATCAGCTGGTGGACACGGACGggaacgcgcacacacacacacacacacacacacacacacacgagagagAGACTGGAATGTCTctgcatccacacacacacacacacacacacacacacacacacaatgcggaGGTGGTTTTATTGTGTCAGGTGCAGTTTGAAGGTTCGACGGCGAGCGAACCGAGACTCTAACGGAGGAAAActcagtgtttttgttcttcAGACAAACTTTGGGACGTGTTCTGTTCTTTCTCCCGCTCTTTATTCTCTTTCACCTCGGCCGGTCGGCAGCGGCCGCACCTGAGCGAGACGTGCATGGGCTGAACGCAGCTGTAAACCTGTTCGCTGTTGCAGTAAAGTGACTTCCTGTGACCGTGAGAGCGTCTCTGTTTGTGTCCGTGCTCTCAAACATACTCACCAGCTTGTTTCCCAGCCGCTCTAGTCGCTCGCTCCAGCGGGCCGAGCAGGTAAGACAGCAGGCGGCCATCGTTCACAGATCTGACCCAGAACCATCAGCTCATTCTGTCCAGACacattattaaaggaatagttcagccaaaaaggATAATTCTGTCATATTTACTCGAGTAGAAATGTATAGATTTGTAACTACTTGAGGACGAGGAAATGATGACGgactcatttttgggtgaactatgaaACATGATTGGATTCAGGTTGACTACGATGTACTTGCTGTAATTAAACATGAGGAGTATAATtgtcaagtaaatatttttgggTTCAAAAGTCAGTTTCTTTCTAAATCTAACGCATAGATTTTGTGAAGTCCACCTTTCTGCAGTTTTTGATTGAGTTCTTCTCTATTCCTGTTTGTATGGTGCTTtgaatttgtgattttttcCAGTCTTTTCATTGACCTGATTGATTAAACGTCGCTGTCAAACTTCA

Function

GO: NA

KEGG:

id description
K14327 UPF2, RENT2; regulator of nonsense transcripts 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265303 lncRNA downstream 26849 831337 ~ 833743 (-) True G178828
TU265240 lncRNA downstream 307068 553100 ~ 553524 (-) True G178782
TU265236 lncRNA downstream 314807 545487 ~ 545785 (-) True G178780
TU265235 lncRNA downstream 320306 540059 ~ 540286 (-) True G178779
TU265200 lncRNA downstream 342616 514816 ~ 517976 (-) False G178757
XR_006248605.1 lncRNA upstream 78472 959497 ~ 984681 (-) False LOC122333259
XR_006248606.1 lncRNA upstream 93026 974051 ~ 1004255 (-) True LOC122333259
XR_006248607.1 lncRNA upstream 93027 974052 ~ 1022163 (-) False LOC122333259
XR_006248604.1 lncRNA upstream 93032 974057 ~ 984681 (-) False LOC122333259
TU265332 lncRNA upstream 163357 1044382 ~ 1045445 (-) True G178853
XM_043230738.1 mRNA downstream 16542 836294 ~ 844050 (-) False rpap3
XM_043230737.1 mRNA downstream 16542 836294 ~ 844050 (-) True rpap3
XM_043230779.1 mRNA downstream 61075 786810 ~ 799517 (-) False tbk1
XM_043230780.1 mRNA downstream 61693 786810 ~ 798899 (-) True tbk1
XM_043230696.1 mRNA downstream 75643 779188 ~ 784949 (-) True gpr19
XM_043230787.1 mRNA upstream 433 881458 ~ 890704 (-) True LOC122333240
XM_043230799.1 mRNA upstream 30879 911904 ~ 924259 (-) False mtpn
XM_043230800.1 mRNA upstream 33757 914782 ~ 924260 (-) True mtpn
XM_043230760.1 mRNA upstream 162358 1043383 ~ 1070443 (-) True ptn
XM_043230740.1 mRNA upstream 208790 1089815 ~ 1105373 (-) True tulp3
XR_006248608.1 other downstream 105834 754625 ~ 754758 (-) True LOC122333264
XR_006248609.1 other downstream 106706 753751 ~ 753886 (-) True LOC122333265
TU265205 other downstream 340226 509272 ~ 520366 (-) False G178757
TU265206 other downstream 340226 515717 ~ 520366 (-) True G178757
TU265167 other downstream 523978 307212 ~ 336614 (-) True G178734
TU265306 other upstream 2228 883253 ~ 890779 (-) False LOC122333240
XR_006248601.1 other upstream 30879 911904 ~ 924259 (-) False mtpn
TU265340 other upstream 254465 1135490 ~ 1139105 (-) False G178856
TU265345 other upstream 254465 1135490 ~ 1139105 (-) False G178856

Expression Profile