RNA id: XM_043230792.1


Basic Information

Item Value
RNA id XM_043230792.1
length 1752
RNA type mRNA
GC content 0.51
exon number 8
gene id mapre3b
representative False

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 223370 ~ 229970 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGCGCGCACGCAGGCTTCCGGTCCAGTGTGACGCATGCGTGCGCGTTCAGGACGGAGGCGGTGGGCGCGCGTGTCGCGCTGCGTTTCTAGAGACGCTGATTCCAGAGAGAGCGCGCGGCGCGAGCGGCAGCGGACGGATTCACCTCAGCCGACACCCAGAGGAGAGCTAGTGTACTACAGTGTGTACTACACCTGCTGacgCTGTGGGATGGCGGTAAACGTTTACTCCACGTCCATGACCATCGAGAACCTGAGCAGACATGACATGCTGGCCTGGGTCAACGACTCTCTGCAGCTCGCCTTCACCAAGATAGAGCAGCTGTGCtcagGTGCGGCGTACTGTCAGTTCATGGACATGCTGTTCCCCGGCTGTATCCTGCTGAAGAGAGTCAAGTTCCAGGCCAAGCTGGAGCACGAGTACATCCACAACTTCAAAGTGCTGCAGACCGCCTTCAAACGCATGAATGTGGACAAGatcATTCCCGTGGAGAAGCTCGTCAAGGGCAAGTTTCAGGACAACTTCGAGTTCCTTCAGTGGTTTAAGAAGTTCTTCGACGCCAACTACGACGGGAAAGAGTACGACCCGCAGTTAGCAAGACAGGGACACGACGTCACACCACCATCTAACCCAGGGCCCCAGCGGACGTCACCGACCACGCCCAAAACGATGCCCACCCCCCAGCGCCCCCTAAGCACCGCCCCCTCCGCCGGAACGCGGCGGAACACGCCCCTTTCCCGGAACGGAGGCGGAGACGCTGAGATCATGGAGCTCAACCAGCAGCTGATGGACCTGAAGCTGACCGTCGACGgtctggagaaagagagagacttttACTTCGGTAAACTGCGTGACATTGAGCTGATCTGTCAGGAGAACGAGAGCGACACGAACCCTGTCCTCGGGAAGATCATGGAGGTCCTGTACGCCACAGAGgATGGTTTCGCTCCTCCGGAGGACGACGAGATCGAAGAGCAGCCACAGGACCAGGACGAATACtgatcctcctcatcctcacgcTCTCTTCatctcatctttctttctttctctccctctctttcactCCATCCCCCCACCAGCAGTCACTAGGGGCGTGGTCTAATAGGCTAATAGAGTGAGTAGGGGTGTGTCTATGCTAATGAGGTCTGGGTTGATGCAGTGAAGCTGTGGGTTTAATGAGGAGTCCAGACGACtccatgatgatgatgatggtgatggagtgacactctctcacacacacactgatgtagTGACACACACAGCCAAGGTGAACATATTTCTTTGATTTGCATCATCTTTAGACTTCAGAGCGGACACAGGACAGTAAAGAAAGCCTTCGTGTGTGTGTAAGACATAGTGCAGACGtgagagttttatttatttatgaaggaAACTGTCAAAAGGCATAAATACAAACTTATAAATTCTTATGAAAAAGAACAGGCTTGGCCGTTACTAACAGTTAACCGACTGATGacacaaaaacagttttctagctgctatattttaatttaacatttcattctcagtcttttttatttaattgacgGGTCGGTTTTGATTGGCGGGCCTGTGTCATTAACCCTTTCCCCTCTCATCTGCTGTCACGGCAACCGTTTGCAAACATGCATCCATTTGGAGTTTtactatgtaaaataaaaatgtgtgcgGGGAATGAAGCACATGTGTTTGCTGCTTTATTCACATTATGAAGACATCAGACactaataaacaatataatatataatcata

Function

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248597.1 lncRNA downstream 176369 34201 ~ 47001 (-) True LOC122333180
TU265158 lncRNA upstream 13246 243215 ~ 245009 (-) False dpysl5b
TU265184 lncRNA upstream 131998 361967 ~ 391304 (-) True G178746
TU265180 lncRNA upstream 152333 382302 ~ 389371 (-) True LOC122333201
XR_006248598.1 lncRNA upstream 153718 383687 ~ 386116 (-) False LOC122333201
TU265181 lncRNA upstream 154786 384755 ~ 389371 (-) False LOC122333201
XM_043230777.1 mRNA downstream 1141 213214 ~ 222229 (-) True tmem214
XM_043230778.1 mRNA downstream 1142 213214 ~ 222228 (-) False tmem214
XM_043230749.1 mRNA downstream 11483 198129 ~ 211887 (-) True agbl5
XM_043230750.1 mRNA downstream 26436 189061 ~ 196934 (-) False LOC122333222
XM_043230752.1 mRNA downstream 26463 189060 ~ 196907 (-) False LOC122333222
XM_043230793.1 mRNA upstream 443 230412 ~ 243089 (-) True dpysl5b
XM_043230717.1 mRNA upstream 15109 245078 ~ 259665 (-) True sobpb
XM_043230790.1 mRNA upstream 43654 273623 ~ 299817 (-) True crybg1b
XM_043230718.1 mRNA upstream 73607 303576 ~ 309649 (-) True mrap2b
XM_043230716.1 mRNA upstream 87790 317759 ~ 329602 (-) True sim1b
unassigned_transcript_2687 other downstream 10372 212911 ~ 212998 (-) True trnay-gua_46
unassigned_transcript_2686 other downstream 11127 212171 ~ 212243 (-) True trnaa-agc_30
TU265156 other upstream 7087 237056 ~ 243079 (-) False dpysl5b
TU265160 other upstream 21508 251477 ~ 254842 (-) False sobpb
TU265167 other upstream 77243 307212 ~ 336614 (-) True G178734
TU265205 other upstream 279303 509272 ~ 520366 (-) False G178757
TU265206 other upstream 285748 515717 ~ 520366 (-) True G178757

Expression Profile