RNA id: XM_043230796.1


Basic Information

Item Value
RNA id XM_043230796.1
length 1302
RNA type mRNA
GC content 0.50
exon number 5
gene id echdc3
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 613342 ~ 616781 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttattttgaataaacttCCTCACATCCGGTGGTGCAGCTGTCTCTGTACTGCGCTCATTTCAACactaattaaatatgattttaggAGGTTTTTACAAAGCGTCATACCTTCTGAGGTGCAGCGGGGCGTCTCGGGGGATCTTGAGGAGGAAGATGAGCGCTGATTCTTCACCTCTGACCCTCAGAGAGCAGCAGGACGGAATcaggaGGATCGTCCTGAATAATCCCAGCAAGAGGAACGCTCTGTCTCTGGCGATGCTGGAGTCTCTGAGAGTAGACCTGCTGACAGACTCTTCCTCGGACGACCTGCGGGTCATCATCATATCAGCGCGGGGCCCCGTGTTCTCTGCCGGGCACGACCTGAAGGAGCTGAGGACCGCTCAGGGCCGCGACCATCACAGCAAGGTGTTCCAGACCTgctcagagGTCATGACCCTGATCCAGGACATCCCAGTGCCGGTCATCGCCATGGTGAACGGTGTTGCCACGGCGGCGGGTTGCCAGTTAGTGGCCAGCTGTGATATTGCTATAGCGTCTGATAAATCCActttcgccacacctggagtcAGCGTGGGCCTGTTCTGCTCCACTCCCGGAGTGGCTTTAGGACGAGCTGTGCCTAGAAAGGTTGCGATGGAGATGCTGCTGACGGGCCGGCCGGTCTCGGCCCGGGACGCTCTCATGCACGGTCTGGTCAGTCGGGTGGTGCCCGAGGAGCGGCTGGAGGCCGAGACGCTGGCCGTGGCCCGCCGGGTGTGTGAGAGCAGCCGGCCCGTGGTGGCTCTGGGGAAGGCGGTGTTTCACACACAGATGACTCTGGGCCGGGACGCAGCCTACGCCTCTGCGGCCGGAGCCATGCTGGAGAACCTGAGCCTGCGGGACACTCAGGAGGGCATCCGGGCGTTCCTGGAGAAGCGCAGGCCTGTGTGGAGCAACACTGATGCTGTGGACACAAACACTCAGTGATCCAGAAAAACACCTAAGAGTGTGTCTCTGTACCACTCTATGCTTCacagttgtatttatatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaaagtaatattagCAAAGCAATCAATATTAcaattgtactgtaaaataaaaatgaatattcaaacATTACTGTCTTATCAAATAAGATTGccaattcatataatttttctgtatattatgtaaaaattaataaaatgaaataaaaaaaaaaaaataatcaaataatattatcattacTGTATAAAAGAAGGCTGGATATTGGAATtgtactgcaaaataaaaatggatatttGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264904 lncRNA upstream 54869 554014 ~ 558473 (+) True LOC122333249
XR_006248600.1 lncRNA upstream 58559 553127 ~ 554783 (+) False LOC122333249
TU264891 lncRNA upstream 107805 503211 ~ 505537 (+) True G178557
TU264878 lncRNA upstream 155662 447009 ~ 457680 (+) False G178550
TU264928 lncRNA downstream 20897 637678 ~ 638126 (+) True G178577
TU264949 lncRNA downstream 70657 687438 ~ 755183 (+) True G178589
TU264957 lncRNA downstream 70657 687438 ~ 756101 (+) False G178589
TU264958 lncRNA downstream 70657 687438 ~ 783476 (+) False G178589
TU264967 lncRNA downstream 146777 763558 ~ 769697 (+) False G178592
XM_043230815.1 mRNA upstream 13671 579792 ~ 599671 (+) True lrig3
XM_043230726.1 mRNA upstream 74786 524357 ~ 538556 (+) False LOC122333210
XM_043230727.1 mRNA upstream 74786 524357 ~ 538556 (+) False LOC122333210
XM_043230725.1 mRNA upstream 74786 526305 ~ 538556 (+) False LOC122333210
XM_043230721.1 mRNA upstream 90802 507402 ~ 522540 (+) True etv6
XM_043230748.1 mRNA downstream 6656 623437 ~ 631571 (+) True rtcb
XM_043230694.1 mRNA downstream 158595 775376 ~ 778054 (+) False crebl2
XM_043230693.1 mRNA downstream 158610 775391 ~ 778054 (+) False crebl2
XM_043230734.1 mRNA downstream 184764 801545 ~ 835314 (+) False eps8a
XM_043230735.1 mRNA downstream 184764 801545 ~ 835314 (+) False eps8a
TU264903 other upstream 74464 524311 ~ 538878 (+) True LOC122333210
TU264861 other upstream 156988 451126 ~ 456354 (+) True G178541
TU264814 other upstream 346614 264517 ~ 266728 (+) True G178503
TU264693 other upstream 399067 116245 ~ 214275 (+) True cunh11orf98
TU264989 other downstream 158631 775412 ~ 778365 (+) True crebl2
TU264990 other downstream 158631 775412 ~ 778365 (+) False crebl2
unassigned_transcript_2688 other downstream 183153 799934 ~ 800005 (+) True trnam-cau_120
TU264969 other downstream 219569 836350 ~ 838553 (+) True G178593

Expression Profile