RNA id: XM_043230799.1


Basic Information

Item Value
RNA id XM_043230799.1
length 638
RNA type mRNA
GC content 0.55
exon number 5
gene id mtpn
representative False

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 911904 ~ 924260 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGGTGGTGGGTGTGGACGGGGACTCTTATTCTGAAGTGTCTGCGGGCGCTAGTCTGATAGCGGAAGTTCGTGCCGCTGGTAGCTGCAGTTCAGGCGGATCCCGTCAGTGTCTGATCACAAACTTTCTGTCAAACCCGAAAAACACCCGGAACCCGgTGACATGGGGGATAAGGAGTTGATGTGGGCCCTGAAGAATGGAGATATGGATGAGGTGAAGGCTCTGCTGGTGAagGCTGAGGATGTGAACAGGACTCTGGAAGGAGGCCGGAAGCCGCTTCATTACGCTGCAGACTGCGGTCAGACCGAGATGCTGGAGTTCCTGCTGTCTAAAGGAGCCGATGTGAACGCTCCAGATAAACACGGCATCACTCCGCTGCTGTCTGCCACTTACGAGGGTCATGTGACCTGCGTCAAGATTCTTCTAGAAAAGGGTGCTGATAAGGAACGGAAAGGTCCGGATGGTCTCAGTGCGTTCGAGGCGGCCGAGAGCGAGGCCATCAGAGATCTACTGAAGTGAGTCGGACGCTGCCGGCAGCGGAGAGGTTCTGACCACAGCCACTGGatccagcaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265303 lncRNA downstream 78161 831337 ~ 833743 (-) True G178828
TU265240 lncRNA downstream 358380 553100 ~ 553524 (-) True G178782
TU265236 lncRNA downstream 366119 545487 ~ 545785 (-) True G178780
TU265235 lncRNA downstream 371618 540059 ~ 540286 (-) True G178779
TU265200 lncRNA downstream 393928 514816 ~ 517976 (-) False G178757
XR_006248605.1 lncRNA upstream 35238 959497 ~ 984681 (-) False LOC122333259
XR_006248606.1 lncRNA upstream 49792 974051 ~ 1004255 (-) True LOC122333259
XR_006248607.1 lncRNA upstream 49793 974052 ~ 1022163 (-) False LOC122333259
XR_006248604.1 lncRNA upstream 49798 974057 ~ 984681 (-) False LOC122333259
TU265332 lncRNA upstream 120123 1044382 ~ 1045445 (-) True G178853
XM_043230787.1 mRNA downstream 21200 881458 ~ 890704 (-) True LOC122333240
XM_043230761.1 mRNA downstream 30879 860592 ~ 881025 (-) True upf2
XM_043230762.1 mRNA downstream 30879 862614 ~ 881025 (-) False upf2
XM_043230738.1 mRNA downstream 67854 836294 ~ 844050 (-) False rpap3
XM_043230737.1 mRNA downstream 67854 836294 ~ 844050 (-) True rpap3
XM_043230760.1 mRNA upstream 119124 1043383 ~ 1070443 (-) True ptn
XM_043230740.1 mRNA upstream 165556 1089815 ~ 1105373 (-) True tulp3
XM_043230741.1 mRNA upstream 165556 1089815 ~ 1105371 (-) False tulp3
XM_043230759.1 mRNA upstream 257711 1181970 ~ 1200891 (-) True arid2
XM_043230784.1 mRNA upstream 279457 1203716 ~ 1220286 (-) True gas2l3
TU265306 other downstream 21125 883253 ~ 890779 (-) False LOC122333240
XR_006248608.1 other downstream 157146 754625 ~ 754758 (-) True LOC122333264
XR_006248609.1 other downstream 158018 753751 ~ 753886 (-) True LOC122333265
TU265205 other downstream 391538 509272 ~ 520366 (-) False G178757
TU265206 other downstream 391538 515717 ~ 520366 (-) True G178757
TU265340 other upstream 211231 1135490 ~ 1139105 (-) False G178856
TU265345 other upstream 211231 1135490 ~ 1139105 (-) False G178856

Expression Profile