RNA id: XM_043230811.1


Basic Information

Item Value
RNA id XM_043230811.1
length 669
RNA type mRNA
GC content 0.52
exon number 3
gene id ripply2
representative True

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 310198 ~ 311201 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGTTTGGTCAGAGGTGTGACCTGACCATGTGTTCGGGAGTGTGACCTCGCACCTGACGCGTTTGGCACGAGCACGCGCACGGCTATATAACGTGTCCGGAGCCGGGTCCGAGCATCACTCCGACCGGAATACACTCTTCGGCTTCTCTTCCCACGGACAGCATGGAGAAACTCTCTCACAGACTCGCCTCCGAAAGCGACGCGACGCGACCCTGGAGACCCTGGACGCGCAGCAGCGGGCGCGCGCGCAACACCGGCGCTCACGAGCCTTATAAAAGAGCATCCGCTGAGGAACATCACTCCAAGGCCTCTTTGATCTCGCACCCTGTAAAGTTGTTCTGGCCCAGATCCCGCTGCTTTGATTATCTGTACCGGGACGCTGAGATCCTCCTGCGCAGTTATCCGGTCCAGGCCACAATCTGCCTGTACGAGGACTCCGACAGCGACGATGACGAGGAGGATCGTGACGAAGAGCACGAGAAGGAGCTGAACTGAACACCTTCATCCCTTCCTTCATAGACTCTGAATTCCCGCTCACTTTTAGTCGACGCTTGTAAATAGCTGTgaatatacgtgtatatataaacctagactttatttttttagtatttatgaTAAATTATTAGGCCTGCTGTAACTTATTTCCTATcaataaatgtttagaaatg

Function

GO:

id name namespace
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264812 lncRNA upstream 58016 250318 ~ 252182 (+) True G178501
TU264733 lncRNA upstream 64380 245092 ~ 245818 (+) True G178450
TU264809 lncRNA upstream 65277 243417 ~ 244921 (+) True G178499
TU264719 lncRNA upstream 69806 239917 ~ 240392 (+) True G178437
TU264808 lncRNA upstream 70335 239077 ~ 239863 (+) True G178498
TU264857 lncRNA downstream 95310 406511 ~ 409812 (+) True G178537
TU264873 lncRNA downstream 118812 430013 ~ 432336 (+) True G178549
TU264878 lncRNA downstream 135808 447009 ~ 457680 (+) False G178550
TU264875 lncRNA downstream 145232 456433 ~ 457680 (+) True G178550
TU264891 lncRNA downstream 192010 503211 ~ 505537 (+) True G178557
XM_043230755.1 mRNA upstream 112084 197814 ~ 198114 (+) True ost4
XM_043230697.1 mRNA upstream 130816 177463 ~ 179382 (+) True mrps10
XM_043230809.1 mRNA upstream 157516 150451 ~ 152682 (+) False dynlt1b
XM_043230688.1 mRNA upstream 192290 116300 ~ 117908 (+) False cunh11orf98
XM_043230689.1 mRNA upstream 192290 116300 ~ 117908 (+) False cunh11orf98
XM_043230715.1 mRNA downstream 40878 352079 ~ 389366 (+) True LOC122333200
XM_043230712.1 mRNA downstream 79751 390952 ~ 396784 (+) False naga
XM_043230714.1 mRNA downstream 79758 390959 ~ 396784 (+) True naga
XM_043230690.1 mRNA downstream 121772 432973 ~ 448981 (+) True rerg
XM_043230724.1 mRNA downstream 157894 469095 ~ 479393 (+) True LOC122333209
TU264814 other upstream 43470 264517 ~ 266728 (+) True G178503
TU264693 other upstream 95923 116245 ~ 214275 (+) True cunh11orf98
TU264696 other upstream 156983 150521 ~ 153215 (+) True dynlt1b
TU264685 other upstream 189587 116245 ~ 120611 (+) False cunh11orf98
TU264861 other downstream 139925 451126 ~ 456354 (+) True G178541
TU264903 other downstream 213110 524311 ~ 538878 (+) True LOC122333210
TU264989 other downstream 464211 775412 ~ 778365 (+) True crebl2
TU264990 other downstream 464211 775412 ~ 778365 (+) False crebl2
unassigned_transcript_2688 other downstream 488733 799934 ~ 800005 (+) True trnam-cau_120

Expression Profile