RNA id: XR_006248604.1


Basic Information

Item Value
RNA id XR_006248604.1
length 2610
lncRNA type inter_gene
GC content 0.40
exon number 6
gene id LOC122333259
representative False

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 959497 ~ 1022163 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgcgtgggttGGGTGAAAGTTTACCGCTGCGCCTTTTGAAAAAGTGAAATTCTCATTTTGGTATGAAAAGCTGATCTCACTGCATCACCGGGACAGCAGCTTCCCTGATGAAACTTTCCGCCTCGTTCAGCACTTTCTATGGTGCGCCGATAGATTAAAGACGGACAGACGGTCCTCGTTTGAGAGCTGGGTGGGTGTTTAGGTGCAGCGCACCCAGGAATATCTGGACACCTCGAGCGAGAATGACATTCTGCCGTCACTTTCTCCCCCTCGTGtcatgacttactttcttctgtggaaggAGGAGTTTTTTTGCACCGGGCTGTCAAGAGGCAAAAAATGACAAACGAAAGCGATCTATGTGTTTCAGGAGCGCTAGCCAGCTCGACAGCATCCGTCTCTATTATGAATAAGCACTGACTCTGCAACTCTCTGGTTTTTGTAGTCCGCTGAAGAGAAGTCAAAACAGGATGAAGTGTCACATGTGGCTTTTCTTGAGAGGTTTCGGGAGATTTTCCTAGACATCGGAAGACGAAAGTCGTTCTTCCACGAGCTCCAGACCGAAAGCGGTACTTCCCAGGCCCAGGGCCACGTTCTGCTGTCTGGAGATGTCAATGCCAGGACCGGTCCTGAGTGTGACAGCGCCGGAGCTCTCGGGAATAAACTCTCAGTCAGAAGCGCTCCGTACCTGCTCTCCGGACTGAAGAGaagagagaaagtgCATGAAGCAAATGGCATGTTCCTCTAAAGTGTGTTCAGGTGACATGCTACGGCGAAGCGTCCGGTCGAAGCGTCCGCGGCTCTCCCCGTAATGAGGCAGCGGAGGAAATGAGCGAGTGAATGTGTGGAGGTGTAATAGACGGAGGGAGAAATGGAAAGAGATGAATCGCTAGCAGATAGATAATTGGAAAGAGGCTCTCTGGAGAAGGCTGGTGTAATTAGAACGGAGGAGTGTGTGAGGAATCtaaatgtttctgtgtttggGTCCATGTCCTGTAGAGCCACTCAGACACACGGGTCCATCTGTTTCCTGCTGCTTCACCTGCATCCAGACACGACGGCAGCTGGCCCTTTCTATGGTTCTGAGTGCGTGCGGATTGATCGTATCTCGTCACATAAACACAAGTATGTCTGGAAACAGACGCTCACTTAGTTGTGCACGAGGGCCGCCGTTAACGTAAACGCTCCTCTGCTTTCAGTAAGCAAGTAAGTTAAAGTCAGCTTATACTTTCTATTAAAATTCATGCTATAGTTTATAATTGtgtatcatttataatatagtaTCATTTAATGTGCgtatttctattatattaaGCACTAAAAAGCGCTAACGTGGAcacctttcaaaataaaaataataatatcaacaaTAATAGCCATTATgaactgtgtttattatatattacttcaGTGTGTTACATTGGATGCCGTATACTTGTActatgtgttaaaaaaaaaaaacacttaaatattaGCCTTGACCCTATAGCTTGCgatctctattctaattctgatctttaaaaaaaacttgcattattttcatttacttactgcttttcttataaaaaaaaacactagcttCTCTATTCTTTCggttccttttctttttatttattacacaattaattacaaaaacaaaagcttaaagcttgctctattctttttctattctgtttcatttttattatgtaacgTGAAAATTCCTTGTCCTTTTTATGCTAACTGAGACTCGTAATAGAACGTGAATATATTTCTCTCTTGCTGGTAGTGATTACTTCTGTTGTCCTTGTTTGTAAAAACGTCTGGTAAATGTTCAATTTACAGTTAGTTACAGGAAcatctgtgttgtgtgtatttgcataGAATGTGTTTTCTGCGTGCAAGGTTTTTAACGATTGTATCAGATTAATTGGATTCAGTGCCATTCTTCAAAAACCTAACATTAATACTCTCGCATTAATAAACAGCATACGGTGATTATTTGTGAAACTGTACATagcaactatttttttatatagttttgtaACACcgttgtacctttttttttaacaaaagaagaataaaatgaagaaaaaagctCAAATAGAGAGCATGGTGAAATTAATATGCACAAACTTTTAAGAATTTATACCATCAGTGCATTGTATGTTTCttcagataaaagcatctgtcaaatgcataaatatagaCAACCTGAGAGTAGTTGTTAAACCGGCTCGCAcgcagttttattttcagtctgtGCGCCTGAAAtatgacataataataataatatagttgaCCCTATATGAGAAAAGGTTACAAACCCTAATAAAAGCATCAAGATTTAACCAGCATTTCTGTTATTGGTGCGTTGACCCACAGCAATAATATAAACGTTAATACAGTGTTTTCATTTAGACATTACTGTAGTATTAGATCAACTTTGACCCCGTTTGTCACTAGGGTGCAGAAGCACAGCTAATAACTGGACAAGTCACATCGTGTACCATCGCACAGGCCTGAACAAAAGGTTCTCACGCTCTAAAAGATACCACTTCAACATGTAATGCATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265254 lncRNA downstream 27534 856479 ~ 946523 (-) True G178791
TU265303 lncRNA downstream 140314 831337 ~ 833743 (-) True G178828
TU265240 lncRNA downstream 420533 553100 ~ 553524 (-) True G178782
TU265236 lncRNA downstream 428272 545487 ~ 545785 (-) True G178780
TU265235 lncRNA downstream 433771 540059 ~ 540286 (-) True G178779
TU265332 lncRNA upstream 59701 1044382 ~ 1045445 (-) True G178853
TU265352 lncRNA upstream 143107 1127788 ~ 1128698 (-) True G178862
TU265342 lncRNA upstream 144518 1129199 ~ 1139105 (-) False G178856
TU265335 lncRNA upstream 150809 1135490 ~ 1139105 (-) True G178856
TU265361 lncRNA upstream 177606 1162287 ~ 1162846 (-) True G178868
XM_043230800.1 mRNA downstream 49797 914782 ~ 924260 (-) True mtpn
XM_043230799.1 mRNA downstream 49798 911904 ~ 924259 (-) False mtpn
XM_043230787.1 mRNA downstream 83353 881458 ~ 890704 (-) True LOC122333240
XM_043230761.1 mRNA downstream 93032 860592 ~ 881025 (-) True upf2
XM_043230760.1 mRNA upstream 58702 1043383 ~ 1070443 (-) True ptn
XM_043230740.1 mRNA upstream 105134 1089815 ~ 1105373 (-) True tulp3
XM_043230741.1 mRNA upstream 105134 1089815 ~ 1105371 (-) False tulp3
XM_043230759.1 mRNA upstream 197289 1181970 ~ 1200891 (-) True arid2
XM_043230784.1 mRNA upstream 219035 1203716 ~ 1220286 (-) True gas2l3
XR_006248601.1 other downstream 49798 911904 ~ 924259 (-) False mtpn
TU265306 other downstream 83278 883253 ~ 890779 (-) False LOC122333240
XR_006248608.1 other downstream 219299 754625 ~ 754758 (-) True LOC122333264
XR_006248609.1 other downstream 220171 753751 ~ 753886 (-) True LOC122333265
TU265206 other downstream 453691 515717 ~ 520366 (-) True G178757
TU265340 other upstream 150809 1135490 ~ 1139105 (-) False G178856
TU265345 other upstream 150809 1135490 ~ 1139105 (-) False G178856

Expression Profile