RNA id: TCONS_00010088


Basic Information

Item Value
RNA id TCONS_00010088
length 1689
RNA type mRNA
GC content 0.41
exon number 11
gene id XLOC_005238
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 14166036 ~ 14211293 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACATACAAATTTACTGACAAGGGTGCGGAAGTTACAGACCTAACACATTAAAGCCACATTATACTCTTCGTTTTTTATTATTTGGAATAATTAGCGCTGATGGAGTGTCAGAGTAAAGAGGAACCCGTGCTGCACATTGTAGTGGTAGGATTTCACCACAAAAAAGGGTGTCAGgtAGAATTCTCGTATCCTCCAATCATTCCTAGTGCGGGTCATGACAGTAGTACACTCCCAGAAGAATGGAAGTACCTGCCTTTCCTGGCACTGCCTGATGGAGCACACAATCATCAGGAGGacACTGTTTACTTTCATTTGCCTCCTCTGGATGGACAGCTCAAATGCGTTTATGGAGTTTCTTGCTACAGACAGATGGAGGCTAAGGCACTAAAAAAACGGGAGGCAGATGTCACAAGAGAGACTGTTCAGAAGAGTGTATGCGTTCTCAGTCGACTGcCACTCTTTGGTTTGATACAGGCCAAACTTCAGCTCATAACTCATGCATACTTTGAAGAAAAAGATTTCTCCCAGATCTCCATCCTAAAGGAGCTTTATGATCATATGAACAGATCTTTAAACTGTACATCGCTGGAGGGATCACAGATTTATCTAAGTCTGTCTGCCAGAGATTTAATTTTGCACTTTAAACACAAGGTTCTTGTTCTCTTTAAGCTGATACTGCTTGAAAAGAAGATCCTGTTTTATGTGACTCCAGTGAAAAGATTGGTTGAAACTCTGATGACCATCCTGTCATTGTTTCCAGgTATGATAGAGTACGGGCTGGCAGATTCCTCTCACTATCAGACCCGAAGGAGCATCTCAGAGGATTTCAGTTCACCAGAAATCATATCTGCAGATGAAGAATCACTATCCTTGTTTTCTACTGATATTACTCGTACACCAAAAGAGAATGAGCACAGGTATGATGTCAATGATCCACCAGATCAATCAAAGCCTTGTAATTCTACTTTGGACACACACTACATTGATGCTCGTGCAGAACAACAGAACTTGCTGGACAGCTCTGAGAGTGAATGGGAAACTCTGGAGCCTCATGTGATGGATGAAAAGGAAAGTAAAATGGACATTGGCCATTTAGAGATGTTTGACGCTGATTCCGGACTGCCAATAACAGTACAGCCACAGTCAGCCACAGGACATGGAACACTATCCACAGGCCTGGTATCTGGATTGCAAGAGGACCAGTATGGACAGCCACTCGCTATCTTTACAAAGGGTTACCTGTGCATGCCTTACATGGCACTCCAACAGCACCACCTGCTGTCAGACATAAATGTTCGGGGTTTTGTTTCTGGAGCAACTAACGTCCTCTTTCGACAGCAGCGCCACCTAAGTGATGCTGTTGTAGATGTGAGTCTATGAACCTTTTGTCTTTTGTCTATGTATGTCCTAAATGTACAGGCCAACATGTGGAATTTTATGCTGATAAGTTTGTTGAGAATGTGTGCAGCTCATATTTCACCAAATTGAAGTTAGTTTTTCTTCATGAATTGTGACATGCTAGTCATAAAGATGTGTCCTCCAGATTCCCATGACTGCAATGCATCAGTAAGttttactttttacattcagtTTAGGCACATATTCACCCCCACCTCTATTcaatatgaatttatattttttatttaaaaatataataaattgccGAACTGATACTTTCTTTTATGAAA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-261 Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Orthologous to human AVL9 (AVL9 cell migration associated).

Ensembl:

ensembl_id ENSDART00000077903

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010086 lncRNA downstream 40306 14138286 ~ 14144159 (-) True XLOC_005237
TCONS_00010085 lncRNA downstream 133976 14036432 ~ 14050489 (-) True XLOC_005236
TCONS_00010071 lncRNA downstream 847512 13333532 ~ 13336953 (-) True XLOC_005228
TCONS_00011105 lncRNA downstream 1078242 13102866 ~ 13106223 (-) True XLOC_005224
TCONS_00011104 lncRNA downstream 2534775 11647192 ~ 11649690 (-) True XLOC_005220
TCONS_00011106 lncRNA upstream 628720 14839787 ~ 14840559 (-) True XLOC_005240
TCONS_00010803 lncRNA upstream 906820 15117887 ~ 15120113 (-) False XLOC_005243
TCONS_00010802 lncRNA upstream 906820 15117887 ~ 15120113 (-) False XLOC_005243
TCONS_00011107 lncRNA upstream 907386 15118453 ~ 15120113 (-) True XLOC_005243
TCONS_00011108 lncRNA upstream 914342 15125409 ~ 15126049 (-) True XLOC_005244
TCONS_00010084 mRNA downstream 106395 13973643 ~ 14078070 (-) False XLOC_005236
TCONS_00010083 mRNA downstream 106399 13973058 ~ 14078066 (-) False XLOC_005236
TCONS_00010082 mRNA downstream 218281 13961268 ~ 13966184 (-) True XLOC_005235
TCONS_00010081 mRNA downstream 279158 13888670 ~ 13905307 (-) True XLOC_005234
TCONS_00010080 mRNA downstream 297513 13811631 ~ 13886952 (-) True XLOC_005233
TCONS_00010089 mRNA upstream 334408 14545475 ~ 14551077 (-) True XLOC_005239
TCONS_00010090 mRNA upstream 709021 14920088 ~ 14922955 (-) True XLOC_005241
TCONS_00010091 mRNA upstream 754520 14965587 ~ 15002563 (-) False XLOC_005242
TCONS_00010092 mRNA upstream 754533 14965600 ~ 15002619 (-) True XLOC_005242
TCONS_00010093 mRNA upstream 986790 15197857 ~ 15205087 (-) True XLOC_005245
TCONS_00010077 other downstream 534175 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010060 other downstream 1849134 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010022 other downstream 4513328 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010021 other downstream 4536120 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010016 other downstream 4667512 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010097 other upstream 1370253 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010103 other upstream 2197241 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010104 other upstream 2204743 16415810 ~ 16434838 (-) False XLOC_005253
TCONS_00010105 other upstream 2220749 16431816 ~ 16434835 (-) True XLOC_005253
TCONS_00010111 other upstream 2282285 16493352 ~ 16493468 (-) True XLOC_005255

Expression Profile

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