RNA id: TCONS_00011106


Basic Information

Item Value
RNA id TCONS_00011106
length 532
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_005240
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 14839787 ~ 14840559 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCGATCTTTTTGTTAGTCTTTCCCTTTCACTCGTATTGTTTTGATCACTCATACCTTGCTTTGTTTGCCTCTCGCTTCCCCACCCATCTGCTCTATTACTTTCCATTATTCTATCAAAATAATTTCACTATAATTTCAAACTAATTTCATAGTTCTGTGTCAGATCGTAGTTTTTCCCCTTCCGGCATGTCTGGCGATCTCCTGGTCTAGTCCTGTTCCTTGTTAATCCTGTGAGTTTTGTCGTGTCTGATGTCATCCTGTTGATTTTTCCTGAAGTTGTTTTTCCACATCTGCCTTCAAGCCAGTTCCCGTCTGTTTTTGTATTGCTGCTCATCTGACTTCCCGTCTCTATCCAGCAAGTCCTCATCTCTCTCTCGCCGGCTTCCAAGCCTCAGTCTTCCTCGTAGCCATTCTGTTCCAGTCAGCTGCGGCCGGATCCATCGCCCCCCTGTCGGGTGTCAGGGTATTGCACCCTCTTGAAGACTGTTCTTCTAGCCTCTCCGGAACCTTGAcaattacctgtctaagag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010086 lncRNA downstream 695628 14138286 ~ 14144159 (-) True XLOC_005237
TCONS_00010085 lncRNA downstream 789298 14036432 ~ 14050489 (-) True XLOC_005236
TCONS_00010071 lncRNA downstream 1502834 13333532 ~ 13336953 (-) True XLOC_005228
TCONS_00011105 lncRNA downstream 1733564 13102866 ~ 13106223 (-) True XLOC_005224
TCONS_00011104 lncRNA downstream 3190097 11647192 ~ 11649690 (-) True XLOC_005220
TCONS_00010803 lncRNA upstream 277328 15117887 ~ 15120113 (-) False XLOC_005243
TCONS_00010802 lncRNA upstream 277328 15117887 ~ 15120113 (-) False XLOC_005243
TCONS_00011107 lncRNA upstream 277894 15118453 ~ 15120113 (-) True XLOC_005243
TCONS_00011108 lncRNA upstream 284850 15125409 ~ 15126049 (-) True XLOC_005244
TCONS_00011109 lncRNA upstream 402008 15242567 ~ 15244000 (-) True XLOC_005246
TCONS_00010089 mRNA downstream 288710 14545475 ~ 14551077 (-) True XLOC_005239
TCONS_00010087 mRNA downstream 628494 14166036 ~ 14211293 (-) False XLOC_005238
TCONS_00010088 mRNA downstream 628720 14184465 ~ 14211067 (-) True XLOC_005238
TCONS_00010084 mRNA downstream 761717 13973643 ~ 14078070 (-) False XLOC_005236
TCONS_00010083 mRNA downstream 761721 13973058 ~ 14078066 (-) False XLOC_005236
TCONS_00010090 mRNA upstream 79529 14920088 ~ 14922955 (-) True XLOC_005241
TCONS_00010091 mRNA upstream 125028 14965587 ~ 15002563 (-) False XLOC_005242
TCONS_00010092 mRNA upstream 125041 14965600 ~ 15002619 (-) True XLOC_005242
TCONS_00010093 mRNA upstream 357298 15197857 ~ 15205087 (-) True XLOC_005245
TCONS_00010094 mRNA upstream 724785 15565344 ~ 15567104 (-) True XLOC_005248
TCONS_00010077 other downstream 1189497 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010060 other downstream 2504456 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010022 other downstream 5168650 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010021 other downstream 5191442 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010016 other downstream 5322834 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010097 other upstream 740761 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010103 other upstream 1567749 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010104 other upstream 1575251 16415810 ~ 16434838 (-) False XLOC_005253
TCONS_00010105 other upstream 1591257 16431816 ~ 16434835 (-) True XLOC_005253
TCONS_00010111 other upstream 1652793 16493352 ~ 16493468 (-) True XLOC_005255

Expression Profile

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