RNA id: TU271680



Basic Information


Item Value
RNA id TU271680
length 338
lncRNA type sense_over
GC content 0.56
exon number 3
gene id nicn1
representative False

Chromosome Information


Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 46644 ~ 60759 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTCCATCACTGAGCACTGAGAGGACTGAGAGGACTAGGACTAGGACTGAGAAGACTGAGAGGACTAGGACTAGGACTGAGAGGACTGAGAGGACTGGGCTGTTTAACACTAGACCCTTTCAGTGCAGAGAGCGGGTCAGACTGATGAACACATGATGAAAGCGAGAGCTGCACCGTGAAAGTCGGCCGTGCCGCTGCAGATAGGAGACGCTGTCTCAGACTCCTCTCGGCCCCGGCGTCTACATAACAGACATCTCCCTCGCCGAGCCGCTGGACATTCAGGAGATCTCCTTCAAGAACTACTACACGGCGTATCTGACGGTGCGTCTGCAGCGGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU271682 lncRNA downstream 83 47764 ~ 60755 (+) True nicn1
TU271683 lncRNA downstream 7150 54831 ~ 55668 (+) True G183189
TU271695 lncRNA downstream 22582 70263 ~ 75402 (+) True G183199
TU271710 lncRNA downstream 138335 186016 ~ 196589 (+) True G183212
TU271786 lncRNA downstream 542684 590365 ~ 590995 (+) True G183263
XM_043231928.1 mRNA downstream 59204 106885 ~ 114216 (+) True LOC122334037
XM_043231951.1 mRNA downstream 469202 516883 ~ 528275 (+) False amigo3
XM_043231950.1 mRNA downstream 469202 516883 ~ 527039 (+) True amigo3
XM_043231888.1 mRNA downstream 651564 699245 ~ 715085 (+) True LOC122334017
XM_043231892.1 mRNA downstream 651564 699245 ~ 715085 (+) False LOC122334017
TU271886 other downstream 702179 749860 ~ 752052 (+) True G183328
unassigned_transcript_2690 other downstream 710543 758224 ~ 758295 (+) True trnag-ucc_28
TU271863 other downstream 735603 783284 ~ 786940 (+) True G183316
TU271920 other downstream 797899 845580 ~ 846714 (+) True G183354
TU272093 other downstream 1206270 1253951 ~ 1258660 (+) True G183477

Expression Profile