RNA id: TU271682


Basic Information

Item Value
RNA id TU271682
length 2285
lncRNA type sense_over
GC content 0.44
exon number 5
gene id nicn1
representative True

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 46644 ~ 60759 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACTACTTCTCCATCCACAGACATCAGATGTTGGTGGAGCCTGATAACGTGACGATGGTGAGACTCATCCTGCGACAGCCCTCCTCCGAATGGATCGATTTCAGCGTCCAGGAAATTAACATTTACCCGTCTGCTAAAGAGGTTCTCGTGTGCTGTGTGTCGAGGGGTTTGAGACACTGGAGAAAGAGCTGCAAAATTATACCTGCGTTGTATGTTAAatcagatagatagagagacagagaggacgGATAGAGGGAGACAGacggatagagagagagagagaggaaggatagagagagatggaggacagacggagagagagagacgaaggacggatagatagacagagagagagacacggacggacagagagagagagaggacagatagagagagagagacggaggatagatagagagagacggaggatagatagagagagaaagagagagaggacggATAGAGggagacagatggatagatagagagagaggacggaTAGATAGAGACGGacggatagagagagagagacggtggacagatagacagaggACGGATAGAGAGaggacagatagagagagatggaggatggatagatagagacacggatggacagagagagagagacatggacagacagagagagagagagagagagagagacggtggACAGATAGACGGAggatggatagagagagagaggacagatagatagagagatggaggacggatagatagagagagagagagagacggaggacggatagatagagagagagagacacggacggatagagagagagagagaaatggtgGACAGATAGACAGGACGGATAGAGAGAGGacatatagagagagagacagagaatggATAGATACAGAGAGACGGAGGAcggacagatagagagagagagagacacggaCAGGTAGAGTGAGAGAGAGGacggatagagagagagagatggtggacagaaagacagaggatggatagagagagagagacatggaCGCAcggacagagagaaagagagagacggtGGACAGattgttagagagagagagagacagaggacaAATTGATACAGAGGAcggatagagaaagagagagagagatagacggACAGGTGGATAGatagtttaatatttcataaagacCTGCAGAGTTGATCAGTggatattatttttgtctttccaGGAGCATTAGAGactcttgcttttttttttttttgccgtgtttgtttatttttttctgcttctgcAGATAAtttttgcttgcttgtttgACTAGAATTTGGTTCCGTTTATATTCAGATATCATTTTCGTCAGAGTTGATCAGTGgatgcaagttttaagtttTTCCAACATTCAAAGAagattgttgtttcttttcagTGCTTGTTTGAACTTCACGCGCTTCTATTTTGCTAATTTGACCATTTTCATGCAGTTATCGTTCATTTTATtgcatagtatttattttactcgAACCGTTATTTGACTGAAGCCTTGCTGTGTTTGTCTGAGAAGGACTCGGAGCGAGACGTTCCTGCCTGGATATCTACCCTCACACCTGTAGAGGAACCTCTCGATCTGAATGGACTTCCTGATCCAGAGACGGTTTCCTCCAGCATCCAGCAGATGTGGGCACTGACTGAGATCATGCAGGCGAGCCAAACCGCGGCTTCCATCGGACGCTTCGACGTGGAAGGCTCTTATGACGTCAAACTGCTGTCGTACACGTGAAGGGAAAGCTGAAAACCCAACCGTATTTCAAGAACATcaactgtttattatttaatttcttaaagtaGCGACTTCGTGTTTAAAGCGCGCAGTCcgttgctttttttgtgtttaaaatttgCATAAGAGAGTACACCATGcatccatttttttgtgtttttggctcGTCCTGAATCATTACGGTACACCTTTAATAAGTATTCAGCGGAGTAGTCCAGTACCTGCGTGATTCGCCATAGACAAACAGAAAGAAGTAGATCCGGCTACATTGTTCTTCCGCAAGACGCacacagttctgtttattaactgcTAGAGCGCTAAcagttacagactgcagctttaaaattatagttttatttatatattttttcccactTAATGTTTATAtctattgtataatatattgtttGAGCCTTTCAGCACAAACCATTTCAAATTAATCGAAGTTATCGAAAGCCTGTATTTTATCGGTTGCCATCTAAATTAGATTGCTTTACGCTTTTGTGTATTTacaagcaataaaataatagtcTGTGTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271680 lncRNA upstream 83 46644 ~ 47681 (+) False nicn1
TU271695 lncRNA downstream 9508 70263 ~ 75402 (+) True G183199
TU271710 lncRNA downstream 125261 186016 ~ 196589 (+) True G183212
TU271786 lncRNA downstream 529610 590365 ~ 590995 (+) True G183263
TU271783 lncRNA downstream 531505 592260 ~ 592520 (+) False G183263
TU271787 lncRNA downstream 532631 593386 ~ 593809 (+) True G183264
XM_043231928.1 mRNA downstream 46130 106885 ~ 114216 (+) True LOC122334037
XM_043231951.1 mRNA downstream 456128 516883 ~ 528275 (+) False amigo3
XM_043231950.1 mRNA downstream 456128 516883 ~ 527039 (+) True amigo3
XM_043231888.1 mRNA downstream 638490 699245 ~ 715085 (+) True LOC122334017
XM_043231892.1 mRNA downstream 638490 699245 ~ 715085 (+) False LOC122334017
TU271886 other downstream 689105 749860 ~ 752052 (+) True G183328
unassigned_transcript_2690 other downstream 697469 758224 ~ 758295 (+) True trnag-ucc_28
TU271863 other downstream 722529 783284 ~ 786940 (+) True G183316
TU271920 other downstream 784825 845580 ~ 846714 (+) True G183354
TU272093 other downstream 1193196 1253951 ~ 1258660 (+) True G183477

Expression Profile