RNA id: TU271683


Basic Information

Item Value
RNA id TU271683
length 768
lncRNA type intronic
GC content 0.40
exon number 2
gene id G183189
representative True

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 54831 ~ 55668 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatatatatatatatatatatatatatatatatacatatatatatgtgtgtgtgtgtatatatatatgtgtatttatacataaagctgtgtgtgtgcattgatatatatgtaataacacagcacacacacgcacacagcatgcaaacaaaacgtattttagatgtgattattCTCGATTACTAGTTAGACGGCGCTACTAAAAACGCTCGCATCACTGAAGCCAGGCCAGTAGATGGCGATGTCACATTATAAACATTACACTTTTCTCAAGCCTGCATGCTAGCACAAGTAAatggattgtttttttatttgtaagaatCCGCAGTTTGCGCGTCGGTTCACTTGCGCGACAGCTACctaattactgtttttttacaatttttaagtGAGCCAGAGACGCGCTCTTTCCAGACAATCCCCCCTGAGACAACACCGTCGATTGCGTCCGTGAGATATCGTCGCTAGCAGTTTCTTCGTAGCTGGCAGGACGTTTTGTTTGTCGTGGCGGTGATCTGACGTCCCTCTCTTTGATCTGAGAGTCGTCAGCTTTAATGCATTGAGATCAGGCTCCCTCTGTGCTTTTTAGCTCCGTTTCAAAGACGGTCCTCGGCCGAACTCTTGCAGGATCGCTGCGTTCTGCGCTGTACGGACACCTTTTGGGGCATCGGATGAAATTTACATGGAAAGACCCACCTGGGACGCCACACGgctctgtaatatatatatatatatatatatatatatattaaatcgtTGTAAATAA

Function

GO:

id name namespace
GO:0032400 melanosome localization biological_process
GO:0051875 pigment granule localization biological_process
GO:0051648 vesicle localization biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271680 lncRNA upstream 7150 46644 ~ 47681 (+) False nicn1
TU271695 lncRNA downstream 14595 70263 ~ 75402 (+) True G183199
TU271710 lncRNA downstream 130348 186016 ~ 196589 (+) True G183212
TU271786 lncRNA downstream 534697 590365 ~ 590995 (+) True G183263
TU271783 lncRNA downstream 536592 592260 ~ 592520 (+) False G183263
TU271787 lncRNA downstream 537718 593386 ~ 593809 (+) True G183264
XM_043231928.1 mRNA downstream 51217 106885 ~ 114216 (+) True LOC122334037
XM_043231951.1 mRNA downstream 461215 516883 ~ 528275 (+) False amigo3
XM_043231950.1 mRNA downstream 461215 516883 ~ 527039 (+) True amigo3
XM_043231888.1 mRNA downstream 643577 699245 ~ 715085 (+) True LOC122334017
XM_043231892.1 mRNA downstream 643577 699245 ~ 715085 (+) False LOC122334017
TU271886 other downstream 694192 749860 ~ 752052 (+) True G183328
unassigned_transcript_2690 other downstream 702556 758224 ~ 758295 (+) True trnag-ucc_28
TU271863 other downstream 727616 783284 ~ 786940 (+) True G183316
TU271920 other downstream 789912 845580 ~ 846714 (+) True G183354
TU272093 other downstream 1198283 1253951 ~ 1258660 (+) True G183477

Expression Profile