RNA id: TU271710


Basic Information

Item Value
RNA id TU271710
length 900
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G183212
representative True

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 186016 ~ 196589 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCCCCCCTGCCACACAATGCAGGTGGTGTACATGGTGAAGCCGATGGGTTTGGCTTCGTTGAAGTTCTCCGGAACGCCTCGCGTCTTGATGGCGTAAACCGTACATGTTACCATCAGCAAGATGCTGTATCCTAGAGAGCAAATGATTTGTAGGTCCGTAATGTCACATTTGAGAACCCCTCGGGCCTTGTCGGGGTTTATGGTCTTCTGCTCGTCGTAATCGATTATAGTGTTCGGAGGGTCCACTCCGAACCATATGAGGACCCCTAAGAGCTGGACCGAGATGAGGCTGGACGTGATGGCTAACTGGGACGTCGGGCTGATCAGTTTAGGCGGGGTGACCGACTTCTTCCCTTCCTCGAAGATGCGGTAAATTCGATTGGTTTTGGTGAGGAGCGCGGCGTAGCTGATGCACATTCCCAAGCCGAGGAAGATTCGTCGGAAGGAGCAGACGGCGACGTCCGGGGTGGCGATCATTACGAACGTGATTATATAACACAGGAATATCCCCGTCAGCAGAACGTAGCTGAGCTCTCTCCCGGACGCCCGGACGATCGGGGTGTCGTCGTAGCGGATGAACGTGGCCATGACGAAGATGGTGGCGATGATGCCGAGCATAGCCAAGAAGACGGGGATGACGGCCCAAGGCGAATGCCACTCCAGCTTGACGATCGGGATGGGCTGACAGCCTGTCCGGTTGCCGTTGGGACGCATGTTGTAAGCGCAGAGCTTGCAGGACGTCTCGTCGTACTGGTACTGGTAGCCGTCGCAGGGCTCGCAGTGCCAGCAGCACGGCATGCCCTTCACCATCTTCTTACGTTGACCCGTCTTACAGGGCAGACTGCAGACCGAGCTGGGTATTTCCATCTCGCCGTTGGGCCACTGCATCTCATTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271695 lncRNA upstream 110614 70263 ~ 75402 (+) True G183199
TU271682 lncRNA upstream 125261 47764 ~ 60755 (+) True nicn1
TU271683 lncRNA upstream 130348 54831 ~ 55668 (+) True G183189
TU271680 lncRNA upstream 138335 46644 ~ 47681 (+) False nicn1
TU271786 lncRNA downstream 393776 590365 ~ 590995 (+) True G183263
TU271783 lncRNA downstream 395671 592260 ~ 592520 (+) False G183263
TU271787 lncRNA downstream 396797 593386 ~ 593809 (+) True G183264
TU271791 lncRNA downstream 402139 598728 ~ 605197 (+) True G183268
XR_006248711.1 lncRNA downstream 417263 613852 ~ 616200 (+) True LOC122334030
XM_043231928.1 mRNA upstream 71800 106885 ~ 114216 (+) True LOC122334037
XM_043231929.1 mRNA upstream 125257 47425 ~ 60759 (+) False nicn1
XM_043231951.1 mRNA downstream 320294 516883 ~ 528275 (+) False amigo3
XM_043231950.1 mRNA downstream 320294 516883 ~ 527039 (+) True amigo3
XM_043231888.1 mRNA downstream 502656 699245 ~ 715085 (+) True LOC122334017
XM_043231892.1 mRNA downstream 502656 699245 ~ 715085 (+) False LOC122334017
XM_043231890.1 mRNA downstream 502656 699245 ~ 715085 (+) False LOC122334017
TU271886 other downstream 553271 749860 ~ 752052 (+) True G183328
unassigned_transcript_2690 other downstream 561635 758224 ~ 758295 (+) True trnag-ucc_28
TU271863 other downstream 586695 783284 ~ 786940 (+) True G183316
TU271920 other downstream 648991 845580 ~ 846714 (+) True G183354
TU272093 other downstream 1057362 1253951 ~ 1258660 (+) True G183477

Expression Profile