RNA id: TU271870


Basic Information

Item Value
RNA id TU271870
length 2319
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G183318
representative True

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 694820 ~ 764932 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACAGGTCATAGTGGCTGATGCGCAAAAAAGTTAAATCCATACAGTGATCTACGTACATTATGTTCAAGAGATgattaattcagaaataaatctgtcatcgtttactcaccatTAGCAGGCATTTCTGTGCTCATGTTGTTAAGTAGACTATTGATCCTCTACTCGACAAAAACCCTCTTCCATAAAAAAGTCATGAGTAATTTTTCTGAGCTTGCATTACATCTCCCACATTTGCAAGCGTATgaattgaatgaaatgaaaagtctAGCGTGACCGCCCCTTTTGAAAAAGAAACCTTTAATGGTTTTGATGACAAATAATCTCACCGATTTCCTCCAAGCTCGTGAGTTGGCCGGTCAGAGTCGGCAAAGTGGTCTGGACAGGAAAGCCTCTCTGATGCAGGAAGTTCATGGCATGAGTCTGGACCTCGATAACAGAGCTGTTTTGACTGTCTGCAGAGTTCAGAATCTTTAGCAGGAATTCTCCACCTTCACTGGCGGCAATGTAAAAGTTCTGATCAATATAACTGGGCAATGGTAGAACGACGGACACGGTCAAGCCGTAGAGGCGCTTCATAATCTCTGTAGCCTGGGAATGGCTGAGATATGGGTTCGATTCTTTTGTTGACATGGCTGAGGATGGAAAAAAACGTTCACTGGTGAATAACCTCTTAATGGAAGGAATAATTTCATCAGAAATCGCAATCCCTATAAAGAGGTTAGACAAACAATGAATCGTTATAGGATGTTACCAAACTACATTAAGATTCTTCACAAATTAtcatgcaataattaaatacgCAACAAAGGACAGATCTGGAAAAGTCAGTCAGTGTTGTCTATTGTAAGTGAtacTTTCACTCttaatttatcaattttattcaacatttgaaaataagCTTACATTTTGGAATTCAGTACTGAAACATTTAAGCCGGTTAGTGACATTTAACACATCTGcggtgatattttatttttggctggtttctctttatataaaaaaaaaaaaaaacttaaacagcACTTGTACCTCAAGAAATAATTTTGTCGGCtcgtgaaaaaaaataaaataaaagtgcaattGAAAACGCAAAGCATTAACGGCTTTATAAAGTccaaacaaataagaaaatgtttttatggtgATGTCTCCACGTGATCGtgattaaacatttgatttttcaGAAAGTATAGCAGCCATTGCTGTGACAGCGTACACATTTGGTTGAGCTTGTCTAAATGACATTCAATAAAAATCAGAGAAGCGAGGTGATCAGCATAAAGCATTCATAACTCCAATTAAGCGTCATGAATGTTGGTTGCTTTAGTGTTTGTTGATGATGGCAAGAACATTAAGGCATTCAGCTTTGTACACATAATATGTCTCTACCAAAAGAAGCCAAGTGGGACAAAAAGAAAAGGCAAAGACTGTAATATTCTTCACTCttaataaatgcagaattaaaaagtttcttggCTTTCTctacatatattttcatatatgcTTCACAAAAAATACTTTGCTACATAGTGTTCACACAAAATCGTCTGACGcattaaaatgttgtgaaaCCACACTTTCCACCGAATGTTTTAATCTGGAAATGCATTGGTAAAAATTGCTGTATTAGAGAAGTCTATCTAGACGATCAGTGTCTGTGACAAGGGTGGTGCAATTAtggtaaacaaaacattttaattgcccTCATTTTCTACctaaaagaaaacatacttGATAAAGGTTGCACTGAATACATTTGCTGTTTACAAACATATCAGATGTTAACCTGCATGTCTGACTCTGCCATAGTTATCCAAGGGGCATCTAAACtgtgcaaaatgtaataaagataTGGTTAAACTGTTCACATGAAACGTGGCCAACATGCTAGATAACCAACAAGATgcacttaataaaataacaatggcGCAACATTTAAAACCGCTAAAAATAGccataaagaaaagaaatggcaaCATCGTCTACTCTCTTTCGCACAGAATcctaacatttaataatatcgATGTGTTAAGATTACAGATAAGTCATTCCTGATGAACGGAACTGCTGCTCAAGATAAAACGTGGGATACCGAGAGACAACATTTTGAAAGTGAACAGAAGTGCTCTAGTGACAGGCAGGGGGCGTGGTTCTTCGGGTGTCTTTAAAACTCCACTTTGCATGCTGGGAAGGTCTCGTCCTGCATGGCCACGGTGCTGTTGCTACCAAGGACGGTGATCGCTAGATCTTTCTGCCGCTCGTGGGTCTCCTGGTACCAGCTGTGCATAGTCAGCGAATCAAACGTGGGGATTAGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248711.1 lncRNA upstream 78620 613852 ~ 616200 (+) True LOC122334030
TU271791 lncRNA upstream 89623 598728 ~ 605197 (+) True G183268
TU271787 lncRNA upstream 101011 593386 ~ 593809 (+) True G183264
TU271783 lncRNA upstream 102300 592260 ~ 592520 (+) False G183263
TU271786 lncRNA upstream 103825 590365 ~ 590995 (+) True G183263
TU271865 lncRNA downstream 18352 783284 ~ 786940 (+) False G183316
TU271866 lncRNA downstream 18352 783284 ~ 786940 (+) False G183316
TU271900 lncRNA downstream 22678 787610 ~ 787820 (+) True G183338
TU271905 lncRNA downstream 39580 804512 ~ 810324 (+) True G183342
TU271906 lncRNA downstream 39580 804512 ~ 898906 (+) False G183342
XM_043231951.1 mRNA upstream 166545 516883 ~ 528275 (+) False amigo3
XM_043231950.1 mRNA upstream 167781 516883 ~ 527039 (+) True amigo3
XM_043231928.1 mRNA upstream 580604 106885 ~ 114216 (+) True LOC122334037
XM_043231929.1 mRNA upstream 634061 47425 ~ 60759 (+) False nicn1
XM_043231957.1 mRNA downstream 24300 789232 ~ 792555 (+) True LOC122334053
XM_043231956.1 mRNA downstream 28231 793163 ~ 801337 (+) True mccc1
XM_043231964.1 mRNA downstream 320872 1085804 ~ 1088890 (+) False dnajc19
XM_043231933.1 mRNA downstream 354775 1119707 ~ 1124593 (+) True LOC122334044
XM_043231922.1 mRNA downstream 362931 1127863 ~ 1145945 (+) True LOC122334032
TU271863 other downstream 18352 783284 ~ 786940 (+) True G183316
TU271920 other downstream 80648 845580 ~ 846714 (+) True G183354
TU272093 other downstream 489019 1253951 ~ 1258660 (+) True G183477
unassigned_transcript_2691 other downstream 607443 1372375 ~ 1372448 (+) True trnat-ugu_55
unassigned_transcript_2692 other downstream 607956 1372888 ~ 1372977 (+) True trnar-ucu_54

Expression Profile