RNA id: TU271888


Basic Information

Item Value
RNA id TU271888
length 249
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G183329
representative False

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 752592 ~ 753274 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttgatcaaattaatttgtttttgcgaaagaaaaatgtttggcCACATTATACTCTGAACAAACTCACTAGtttctctgctgcagtgttCTCCACAAACCTCGAACCATGACCCGGACTTCCTGGACAACGGACTGTGATCCCTGCAGGACAGAGAACATGTATgttaacacactcacacacacacacactctctcactcacacactcgcactcacacactcgcacacactcactcgcacacactcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248712.1 lncRNA upstream 32454 719313 ~ 720138 (+) True LOC122334031
XR_006248711.1 lncRNA upstream 136392 613852 ~ 616200 (+) True LOC122334030
TU271791 lncRNA upstream 147395 598728 ~ 605197 (+) True G183268
TU271787 lncRNA upstream 158783 593386 ~ 593809 (+) True G183264
TU271783 lncRNA upstream 160072 592260 ~ 592520 (+) False G183263
TU271865 lncRNA downstream 30010 783284 ~ 786940 (+) False G183316
TU271866 lncRNA downstream 30010 783284 ~ 786940 (+) False G183316
TU271900 lncRNA downstream 34336 787610 ~ 787820 (+) True G183338
TU271905 lncRNA downstream 51238 804512 ~ 810324 (+) True G183342
TU271906 lncRNA downstream 51238 804512 ~ 898906 (+) False G183342
XM_043231888.1 mRNA upstream 37507 699245 ~ 715085 (+) True LOC122334017
XM_043231957.1 mRNA downstream 35958 789232 ~ 792555 (+) True LOC122334053
XM_043231956.1 mRNA downstream 39889 793163 ~ 801337 (+) True mccc1
XM_043231964.1 mRNA downstream 332530 1085804 ~ 1088890 (+) False dnajc19
XM_043231933.1 mRNA downstream 366433 1119707 ~ 1124593 (+) True LOC122334044
XM_043231922.1 mRNA downstream 374589 1127863 ~ 1145945 (+) True LOC122334032
TU271886 other upstream 540 749860 ~ 752052 (+) True G183328
unassigned_transcript_2690 other downstream 4950 758224 ~ 758295 (+) True trnag-ucc_28
TU271863 other downstream 30010 783284 ~ 786940 (+) True G183316
TU271920 other downstream 92306 845580 ~ 846714 (+) True G183354
TU272093 other downstream 500677 1253951 ~ 1258660 (+) True G183477
unassigned_transcript_2691 other downstream 619101 1372375 ~ 1372448 (+) True trnat-ugu_55

Expression Profile