RNA id: TU271900


Basic Information

Item Value
RNA id TU271900
length 211
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G183338
representative True

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 787610 ~ 787820 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCACTGTAGATGTCTTCGTACATTTAACCAATATTGGGAGTTACGTAATCAGATTAGTTTTTTCAACTAGTAAAATAgcacattacttttaaatttaagaaGTAAATGCAAGAAGTAGCATTACTTTCCATGAAAAAAAGTACATGACGTAAAAGCAAAAACTTGAGGCATTGATACACTAAAATTTACTTTGGCATGCGTATGCTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271865 lncRNA upstream 670 783284 ~ 786940 (+) False G183316
TU271866 lncRNA upstream 670 783284 ~ 786940 (+) False G183316
TU271870 lncRNA upstream 22678 694820 ~ 764932 (+) True G183318
TU271888 lncRNA upstream 34336 752592 ~ 753274 (+) False G183329
TU271887 lncRNA upstream 34472 752592 ~ 753138 (+) True G183329
TU271905 lncRNA downstream 16692 804512 ~ 810324 (+) True G183342
TU271906 lncRNA downstream 16692 804512 ~ 898906 (+) False G183342
TU271980 lncRNA downstream 212236 1000056 ~ 1002075 (+) True G183403
TU271981 lncRNA downstream 212236 1000056 ~ 1070132 (+) False G183403
TU271982 lncRNA downstream 234327 1022147 ~ 1023159 (+) True G183404
XM_043231888.1 mRNA upstream 72525 699245 ~ 715085 (+) True LOC122334017
XM_043231957.1 mRNA downstream 1412 789232 ~ 792555 (+) True LOC122334053
XM_043231956.1 mRNA downstream 5343 793163 ~ 801337 (+) True mccc1
XM_043231964.1 mRNA downstream 297984 1085804 ~ 1088890 (+) False dnajc19
XM_043231933.1 mRNA downstream 331887 1119707 ~ 1124593 (+) True LOC122334044
XM_043231922.1 mRNA downstream 340043 1127863 ~ 1145945 (+) True LOC122334032
TU271863 other upstream 670 783284 ~ 786940 (+) True G183316
unassigned_transcript_2690 other upstream 29315 758224 ~ 758295 (+) True trnag-ucc_28
TU271886 other upstream 35558 749860 ~ 752052 (+) True G183328
TU271920 other downstream 57760 845580 ~ 846714 (+) True G183354
TU272093 other downstream 466131 1253951 ~ 1258660 (+) True G183477
unassigned_transcript_2691 other downstream 584555 1372375 ~ 1372448 (+) True trnat-ugu_55
unassigned_transcript_2692 other downstream 585068 1372888 ~ 1372977 (+) True trnar-ucu_54
unassigned_transcript_2693 other downstream 585404 1373224 ~ 1373297 (+) True trnat-agu_69

Expression Profile