RNA id: TU271981


Basic Information

Item Value
RNA id TU271981
length 473
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G183403
representative False

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 1000056 ~ 1070132 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgaaaaaaaaaactcagatcGTAACTGTTATAATGATgttattagttaaaatatatacatggagCGTTGGCAGCCGCGTACAGGCCACGTTTTACAACTAcgaaaaatgaaagtttttaaaataaaaacttaaaatatcacagaaaatgtacagaaattTTACAAACCGTGAGAAAATAAAGAACACAAACTTCATGTACCTAACAGATGAGGAGTGGGAGACCGAAAAGGATCGAATCAAGTGATCTAACCCGCGAGAGTGCCTCTTGTTTGTTCTCGCGGTCGGAACTTAATCATaattatgatgataataataataataataatgataacggTTTATTACTATGCACCTTCGTCGAGAAGCTATTTTTGACCCGCCCGTTCTCAGAAGAGTTTTGGAGCACAAGCCGAAGCGAACATCGGCCGCGCCATCGtttttgcctcttttttttttgtttgttttttttgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271906 lncRNA upstream 101150 804512 ~ 898906 (+) False G183342
TU271905 lncRNA upstream 189732 804512 ~ 810324 (+) True G183342
TU271900 lncRNA upstream 212236 787610 ~ 787820 (+) True G183338
TU271865 lncRNA upstream 213116 783284 ~ 786940 (+) False G183316
TU271999 lncRNA downstream 15699 1085831 ~ 1088885 (+) True dnajc19
TU272000 lncRNA downstream 15699 1085831 ~ 1088885 (+) False dnajc19
TU272001 lncRNA downstream 15699 1085831 ~ 1088885 (+) False dnajc19
TU272002 lncRNA downstream 15699 1085831 ~ 1088885 (+) False dnajc19
TU272061 lncRNA downstream 57748 1127880 ~ 1129636 (+) False LOC122334032
XM_043231956.1 mRNA upstream 198719 793163 ~ 801337 (+) True mccc1
XM_043231957.1 mRNA upstream 207501 789232 ~ 792555 (+) True LOC122334053
XM_043231890.1 mRNA upstream 284971 699245 ~ 715085 (+) False LOC122334017
XM_043231964.1 mRNA downstream 15672 1085804 ~ 1088890 (+) False dnajc19
XM_043231933.1 mRNA downstream 49575 1119707 ~ 1124593 (+) True LOC122334044
XM_043231922.1 mRNA downstream 57731 1127863 ~ 1145945 (+) True LOC122334032
XM_043231930.1 mRNA downstream 85143 1155275 ~ 1159822 (+) True LOC122334039
XM_043231952.1 mRNA downstream 95197 1165329 ~ 1195429 (+) True psmd1
TU271920 other upstream 153342 845580 ~ 846714 (+) True G183354
TU271863 other upstream 213116 783284 ~ 786940 (+) True G183316
unassigned_transcript_2690 other upstream 241761 758224 ~ 758295 (+) True trnag-ucc_28
TU271886 other upstream 248004 749860 ~ 752052 (+) True G183328
TU272093 other downstream 183819 1253951 ~ 1258660 (+) True G183477
unassigned_transcript_2691 other downstream 302243 1372375 ~ 1372448 (+) True trnat-ugu_55
unassigned_transcript_2692 other downstream 302756 1372888 ~ 1372977 (+) True trnar-ucu_54
unassigned_transcript_2693 other downstream 303092 1373224 ~ 1373297 (+) True trnat-agu_69
unassigned_transcript_2694 other downstream 303551 1373683 ~ 1373756 (+) True trnat-ugu_56

Expression Profile