RNA id: XM_043231922.1


Basic Information

Item Value
RNA id XM_043231922.1
length 2234
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC122334032
representative True

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 1127863 ~ 1145945 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAAATTAATCTCGAGGTTCGCATTACTCATGTTAGGTTTTttggagattaaaaaaaaaagatgtttcgATTTATTATGCTCACTGGATTGGTTTTACTGATCGGTGGATCAATACCAACAGCTGCtcaaacaacagaaacaacaacTGAACCCACGTCTACAAATGAAACATTACCTACATCAGCATCTCCATCTGAATCAACGACAACAGCTGAAACAACTGAGACAACAACTGAACCCACGTCTACAACTGAAACATTAACTACATTAACATCTACATCTGAATCAACAACAAAAGctgaaacaactgaaaccaAATCTACCCCTGTGACAGAAACAACAACGGCTCCATCTACCACAACTgcaccaacatctaccactctaacaacaacaactctgccaacatctaccactttatcaacaacaactctgccaacatctaccactttatcaacaacaactctgccaacatctaccacatcTACCACAACTgcaccaacatctaccactctaacaacaacaactctgccaacatctaccactttatcaacaacaactctgccaacatctaccactttatcaacaacaactctgccaacatctaccactttatcaacaacaactgagccaacatctaccacaacaactgagctaacatctaccactctaacaacaacaacaactgagccaacatctaccacaacaactgagccaacatctaccactctaacaacaacaactgagccaacatctactacaacaactgagccaacatctaccactctaacaacaacaactatgccaacatctaccactttatcaacaacaactctgccaacatctaccactttatcaacaacaactctgccaacatctaccactttatcaacaacaactgagccaacatctaccacaacaactgagctaacatctaccactctaacaacaacaactgagccaacatctaccacaacaactgagctaacatctaccactctaacaacaacaactgagccaacatctactacaacaactgagccaacatctaccactctaacaacaacaactgagctaacatctaccacaacaactgagctaacatctaccactctaacaacaacaactgagcaaacatctaccacaacaactgagccaacatctaccacaacaactgagacaacatctaccactctaacaacaacaactgagccaacatctactacaacaactgagccaacatcgaccactctaacaacaacaactgagctaacatctaccactctaacaacaacaacTGCAACAACTacaccaacatctaccacaacaactgcaccaacatctaccactctatcaacaacaactgagccaacatctaccactctatcaacaacaactgagccaacatctaccaccacaactgagccaacatctaccactctaacaacaacaactgcaccaacatctaccacaacaactgagccatCTACCACTCTTGCAACAACTgcaccaacatctaccacaacaactccaacatctaccactctaacaacaacagcTGCACCAACATCTGCCACAACAACTGaaccaacatctaccactctaacaacaacaactgagccaacttCTACcactttaacaacaacaactgagctaacatctaccactctaacaacaacaaccgatccaacatctaccacaacaactgaaccaacatctaccacaacaactgagacaacatctaccactctaacaacaacaactgagtcAACATCTACCACTTTAACAACAACTGCACTAACATCTACCACTCCATCAACAACAACTGTGCCAAAgtctaccactctaacaacaacaactgcaccaacatctaccacaacaacagcgccaacatctaccacaacaactgagccaacatctaccacaacaactgagccaacatataccactctaacaacaacaaccgatccaacatctaccacaacaactgaaccaacatctaccacaacaactgagacaacatctaccactctaacaacaacaacaacttctaccactctaacaacaacaactgcaccaacatctaccacaacaacagcgccaacatctaccacaacaactgagccaacatctaccacaacaactgagccaacatatACCACTCTAACAACTACCACAACAACTGCGCCAACATatacatctaccacaacaactgagccaacatctaccacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271999 lncRNA upstream 38978 1085831 ~ 1088885 (+) True dnajc19
TU272000 lncRNA upstream 38978 1085831 ~ 1088885 (+) False dnajc19
TU272001 lncRNA upstream 38978 1085831 ~ 1088885 (+) False dnajc19
TU272002 lncRNA upstream 38978 1085831 ~ 1088885 (+) False dnajc19
TU271982 lncRNA upstream 104704 1022147 ~ 1023159 (+) True G183404
XR_006248714.1 lncRNA downstream 97 1146042 ~ 1147773 (+) True LOC122334055
TU272077 lncRNA downstream 18479 1164424 ~ 1164872 (+) True G183466
TU272073 lncRNA downstream 77323 1223268 ~ 1226091 (+) True G183463
XM_043231933.1 mRNA upstream 3270 1119707 ~ 1124593 (+) True LOC122334044
XM_043231964.1 mRNA upstream 38973 1085804 ~ 1088890 (+) False dnajc19
XM_043231956.1 mRNA upstream 326526 793163 ~ 801337 (+) True mccc1
XM_043231957.1 mRNA upstream 335308 789232 ~ 792555 (+) True LOC122334053
XM_043231891.1 mRNA upstream 412778 699245 ~ 715085 (+) False LOC122334017
XM_043231930.1 mRNA downstream 9330 1155275 ~ 1159822 (+) True LOC122334039
XM_043231952.1 mRNA downstream 19384 1165329 ~ 1195429 (+) True psmd1
XM_043231931.1 mRNA downstream 198606 1344551 ~ 1346837 (+) True LOC122334042
TU271920 other upstream 281149 845580 ~ 846714 (+) True G183354
TU271863 other upstream 340923 783284 ~ 786940 (+) True G183316
unassigned_transcript_2690 other upstream 369568 758224 ~ 758295 (+) True trnag-ucc_28
TU271886 other upstream 375811 749860 ~ 752052 (+) True G183328
TU272093 other downstream 108006 1253951 ~ 1258660 (+) True G183477
unassigned_transcript_2691 other downstream 226430 1372375 ~ 1372448 (+) True trnat-ugu_55
unassigned_transcript_2692 other downstream 226943 1372888 ~ 1372977 (+) True trnar-ucu_54
unassigned_transcript_2693 other downstream 227279 1373224 ~ 1373297 (+) True trnat-agu_69
unassigned_transcript_2694 other downstream 227738 1373683 ~ 1373756 (+) True trnat-ugu_56

Expression Profile