RNA id: XR_006248713.1


Basic Information

Item Value
RNA id XR_006248713.1
length 1353
lncRNA type intronic
GC content 0.35
exon number 3
gene id LOC122334033
representative True

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 1133203 ~ 1135105 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agctaacaacaacaacaactgccccaacatctaccacaacaactccgccaacatctaccactcttaCAACAACTGTGCCAATATCTACCATTCTTTTAACAACATCTGTATCATCAACATTGATATCAACTGCATTAACATCATCTACCTCTTCACTGACAACAACTCAACCAGCAAGTCAGTCAACAGCATTATCTCCAGAAGCTGTCCTGCGAAACATGACAGCAGTTGCGTacattaatttcaaaatgaGATCCTTCGTTGAGCTGAGGAATGATGAAATCGTTACATATCTTGAAAAGTTTTTCAAGTACACAAACAGCAGTGGGAACATCAGGATTACCGTGAGGAAATCAAAAAAACTATTGACTTGAGGATCTGACGCGGAAAGCTGCAGTCTTTGAACGAAACGATCAGGCAGtcaactaaaaaaatgtttttcatttcatgtgcATCGTTGCTTCAGATTAGATTCTGCTCCCTTCAGTGTGAACGATTAAAAAAGCTCCCGTATAACATCTCAAATTTGAAGAACGCCAGAACGGGTTGCATCCATCTTGCTAGATATTAGCTAGGTAAGTCTTTCGAGACAATAGGCAAAAAATTTGTTAGTGTAAATAGGCTACAGATTTATAAGTGATAtaacgttttaaataaatgctaatgtaGTTACGGTGGTTGAATCACAGGCGATCAggttttcagtttgtttctgaTGTTCCTCATTGATTGATTCACTTTTTCACACCTGCTGTTCGTTTCTTTTACGTCATCTTGATTATTTATTGTCAAATCTTTGTTATTTCTCATTGCTTAGGAGCTGGTTGCTCTGTTCTTGTTtctaatttcttatttttttgtgaataaaagtaCTTCTGCATTAGATCCCCTTTGTGACATCTTTAATTTTTGAGATTTAACCCTTAAACTCCAGAAACACCAGATGTGTGCACGTTATTTGGAAGACATTAGTATGTAGTTATGAAGTCatgaagtatttaaaatatctggTAAATGCTCATCAATGTTGAAATGCCTTGGCAGGTTACAAAATGCTGATCAACCGGTGATGAAAACTAAAACTCTTATGAAAAAGCATAAGtatcagatttgtttttaaaccaatttgacagaaaaatgatttaaattttgCAGGGCTTGCTTTATTTCTAAGCGTAACCTCTTCTCTGTCCCTCTTCTtgattttttcaaatttatcaAGATTATTAAGAAATCTAGACAACAGAAAATCTTTTAATCTCATCTGAAATACCTGAAAACAGTGATATCAGAAATGAATGATGGAAATCATGATATTTCCTCATACTGAAAATCTTGCATACTTTACTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272061 lncRNA upstream 3567 1127880 ~ 1129636 (+) False LOC122334032
TU271999 lncRNA upstream 44318 1085831 ~ 1088885 (+) True dnajc19
XR_006248714.1 lncRNA downstream 10937 1146042 ~ 1147773 (+) True LOC122334055
TU272077 lncRNA downstream 29319 1164424 ~ 1164872 (+) True G183466
TU272073 lncRNA downstream 88163 1223268 ~ 1226091 (+) True G183463
XM_043231933.1 mRNA upstream 8610 1119707 ~ 1124593 (+) True LOC122334044
XM_043231964.1 mRNA upstream 44313 1085804 ~ 1088890 (+) False dnajc19
XM_043231956.1 mRNA upstream 331866 793163 ~ 801337 (+) True mccc1
XM_043231957.1 mRNA upstream 340648 789232 ~ 792555 (+) True LOC122334053
XM_043231889.1 mRNA upstream 418118 699245 ~ 715085 (+) False LOC122334017
XM_043231930.1 mRNA downstream 20170 1155275 ~ 1159822 (+) True LOC122334039
XM_043231952.1 mRNA downstream 30224 1165329 ~ 1195429 (+) True psmd1
XM_043231931.1 mRNA downstream 209446 1344551 ~ 1346837 (+) True LOC122334042
TU271920 other upstream 286489 845580 ~ 846714 (+) True G183354
TU271863 other upstream 346263 783284 ~ 786940 (+) True G183316
unassigned_transcript_2690 other upstream 374908 758224 ~ 758295 (+) True trnag-ucc_28
TU271886 other upstream 381151 749860 ~ 752052 (+) True G183328
TU272093 other downstream 118846 1253951 ~ 1258660 (+) True G183477
unassigned_transcript_2691 other downstream 237270 1372375 ~ 1372448 (+) True trnat-ugu_55
unassigned_transcript_2692 other downstream 237783 1372888 ~ 1372977 (+) True trnar-ucu_54
unassigned_transcript_2693 other downstream 238119 1373224 ~ 1373297 (+) True trnat-agu_69
unassigned_transcript_2694 other downstream 238578 1373683 ~ 1373756 (+) True trnat-ugu_56

Expression Profile