RNA id: XM_043231892.1


Basic Information

Item Value
RNA id XM_043231892.1
length 5430
RNA type mRNA
GC content 0.40
exon number 16
gene id LOC122334017
representative False

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 699245 ~ 715085 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACGCACTTCCTGCCGAAATCGAAAGCGTTTCAAACACGTCTGCCTGGGTTCTGCTGCTTTTTGCGCACAAGAGCGGCTTCAGGTCCTTCAAAGGGTACCTCTATGATGGGCATCGGAATCAGCAGGCTGGGGGGAGGCGTTCGCGGCATTGAGAGCTGACAAGTTGGGCAGGCTTGACAAAACCGCTTCACTTCGGCCTCCAGGCCGGGCCAGTGCAAATGGTCGCGGATTGGCTGGCAGGTGTTATTCACTCCAAGATGTCCTACCTTCGCATGGGCGTGTGCGAGGTCCAGGATGGCCTCCGTTTTTGAGCGCGGTACCACCAGCAGGCCGTTTTTGATGACGAAGTGCAGGAAAGGATGGGGCCCAGGCCACACTTTCTGGTCTTCAGTGACTCGCACTTGCGGCCAATAGTGCTTTAGCTGATCATCCTCCTTTTGAGCCTCCCTTAACCTGTTGAAATACATCATAAAACATGccttaaaaatacagatatttttatgtttaatatttttcattgtgtgGTAACTGCTTCGCGTCATGCCTAACAACCGTGTTCTTCAGCCGTGATTTTTTCACAATACTCATACTTTATTACTTACTTAGTTACAATATACCACTGTTTAGACCCATATACAGCCATTTTATTAATCTCTGTAACATATTGTTTTTCCAGGTCAGGTCAAAGATTGTTTTCATGAAGTAGTCTGTTCATCTGCAGTATGTCAGAGGAGCGAGGAAAGAACTTACCAAGTCTCTCACAGAAACAGAGTGTAAGATCGGGCTCACAAGTGTCCAGCTCTTTGTCTGTGAAGAGTGATTGGTCAAAAGATGCTATGCCACCATACTTCAGTGAGAAAAAAGCATCATCTATAAAAAGTGTAAGATCCGGCTCACAAGTGTCCAACTCTGTGTCTGTGAAGAGTGATTGGTCAAAAGATGCTATGCCACCATACTTCAGTGAGAAAAAAGCATCATCTTTAAAAAGATTTCAATATGAGACATTAGATTCAGACGTCCAGACTCACAGGAGCTTCAAGAATTTAACAGATAATCTCCAGTGGATCTTCCTGattcttGAAAAcgaaataattacttttttgaaGAATGAGCTGGAAaggtttaagaaaatattacaaaaagaaaacttacaagacaatataaaagattttaatgaGAAGAGATGCATTAACAAAGAAGCAGCTCTTGATCTCACGCTCTACTTCCTGAGAGAGATGAAGCAAGAAGAAGTTGCTGATACTCTAGAAAatGAGCTGATCTTCATTCATGATCTAAAGTGTAGCCTAAAGAAGAAGTATCAATGTGTGTTGGAGGGAACTGCAAAGCAAGGCGATTCTACACTTCTGAACAACATCTACACAGATCTCTATATCACTCAGGGTTGTAGTGAACAGGTCAATACTGAGCATGAGGTAAGACAGATTGAAGTTGCCTCCAGACGTCATGAATCACAAGAGATACAGGTTGAGTATAAAAATTTGTTTAACGCACCTGAACGAGACGAGCAGATCAGAACTGTACTGACAAAAGGAGTCGCTGGCATCGGAAAATCAGTCTCTGTACAGAAGTTTGTTCTGGATTGGGCCGAAGGAAAAGCCAATCAAGACATTAGCTTCATATTTCCTCTTCCATTAAGAGAGATTAActtaaagatgaaagaaaaactaagTTTGATGGACCTTATAACTCAGTTTCTCCCAGAGACAAAAGGACTGAATCTTACGAAAAGAAATCAATTCAAAGTCTTGTTCATTCTTGATGGATTGGATGAATGTCGACTTCCTGTAAACTTTAAGGATAATGAGACGTGGTCTGATGTTTCATCACCAGCCTCTCTGGATGTTCTCTTAACAAACCTCATCAAGGGAAACCTGCTTccttctgctctcatctggatcaccacCAGACCAGCAGCTGCCAGTAAGATTCCTCCTGACTGTATCGATCGGCTGACAGAGATACGAGGATTCAATGATGCACAAAAGGAGGAGTACTTCAGAAAAAGAGTGATGGATGAAAATCAGGCCAAAGAAATCACTGACCATGTTAAACAATCAAAGAGTCTCTTTATCATGTGCCACATaccagtcttctgctggatttCAGCCACTGTTCTGCAGAACATtttagaagagaaaagaaataatGTTGTGAAAAACGATCACGCTGATGAGGCCTCCAAAACACTACAGGAGTCAAATACTGAAGACACTCCTAAGACTCTGACACAAATGTACACTCACTTTCTCAGATTTCAGATGCAGCAGAGCAGAAAAAAGTATGATGGAGAACACACACCAGATGTTTTCTGGGATAAAGATGCCATATTTTCACTGGGGAAACTGGCATTTGATCAGCTGGAAAGAAACAATGTGATCTTCTATGACACAGATCTGGAAGCCTGTGGTATTGACGTCTATAAGGCATCAGTGTACTCAGGCATGTGTACCCAGATCTTTAAGGAGGAAACGGGGATCGTTCTTGGTACCATGTACTGCTTCGTTCACTTGAGCATTCAAGAGTTTATTGCATCCCTTTATGTACATATGGTTCTAGACATAAAGAAGAAAAGTGTGTTTGATTACTATGcagaacaagaaaacaaaagtaatacCTTGCTTGATTTGCTTAAGACTGCAGTGGACAAGGCACTAGAGAGTGATAATGGACACCTGGATCTTTTTCTTCGATTCCTTCTTGGTTTGTCACTCCAGTCCAATCAGAGGCTCTTACAGGGTCTGTTGACACAGGAAAATAAAATTGAGCAGAGCAAAAGGCAAATAGTTGAGTACATCAAGCAGAAATTAGAGGATAATCTGTCTCCAGAGAGATCCATCAATCTGTTCTACTGTCTGAACGAAATGAATGACCAAACTCTGGTGAAAGAGATTCAGACCCACCTTAGCAAAGGAAGTCTCGCATCTGCTGACCTTTCACCTGCCCAGTGGTCTGCATTGGTCTTTGTGTTGTTGACCTCAGAGGAGGACCTGGAGGAGTTTGAGCTTCAGAAATTCAAGAAATCAGACGAGTGTCTCATTAGATTATCAGCAGTCATCAAAACCTCCAAAAGAGCTCTGCTAAATGATTGTGGCTTAACAGACAAAAGCTGTTCAGCTTTGGCTGCAGTTCTTGAATCGGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcaggattcaggagtgaagctgctctgcgCTGGACTGAAgaattttaactgtaaattagAGATACTGAGGCTGTGTGACTGTGGTCTAACAGAGGAAAGCTGTTCAGCTCTTGCTACAGTCCTGAGATCAAACTCCAGTCTGAAAGAGCTTGACATCAGCAACAACAATCTGCAGGATTCGGGAGTCAAGAAACTTCAGAATGCATTAGAAAATACAGGATGCACATTGAAGAAACTCAGACTCTCAGGCTGCAGTATCAGTGAAGAAGGTTATAAGgctctgtcttcagctctgagatcaaacccttcACACCTGATAGAGCTGGATCTCACAGGAAATGATCCCGGACAATCAGGAATGAAGGATCTCACTGATTTACTACAGGATCCAAACTTTCCACTGAAGACACTGAGGTTAAGCAGCTGTGAAATGACAGAAGAAGGTTGTTCTGCTctgacttcagctctgaaatcaaacccatcacacctgagagaactggaccTGAGCAGGAATAAACTCGGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGGAAAGCTAGAtctgTGTGATTGCAGTATTACAGAGAGACAGTGTCTCATcctgacttcagctctgaaatcaaacccatcacacctgAAAGAACTGAACCTGAGCgagaatcaaataaaaaacacaggaGTGAATTACTTATGTGACTTACTGAAGGATTCACACTGTAAACTGGAGAGACTGAGGTTAAGCGGCTGTGAAATGAAAGATGAATGTTGTTCTGCTCTGACTTtagctctgaaatcaaacccatcacacctAAGAGAACTGAACCTGAGTGGGACTAAACTTAGAGACACTGGTTTGAAACACCTCAGTGATCTACTGAAGAACAAACAATTCAAGCTAAATAAACTAGATCTGTGTGACTGCAGTATTACAGAGAAACAGTGTCTCATCTTGAgttcagctctgaaatcaaacccatcacacctgagagaactgaacCTAGGTtggaatcaaataaaaaacacaggaGTGGATCACTTATGTGACATACTAAAGGGTTTAAACTGTAAACTGGAGAAATTAAGTCTTTATGACTGTGGCATTACAGATGTCTCTTCTTTAACTCAGTctttaacaaacacaaaaacactgcaGTATCTAAAAGAGCTTCATCTAAGTTATAATAAGATTGGAGACTCAAAGCAGCAGCTCATTGATGTGCTACGAGACTCAAATTGTAAACTGAGTGTAGACAGATAGAGATCATCACCAGAAAAACCTGATTAATGAAAATGCTGAAGTCATCTTGGAGCAGTAAACATCAGATCCACAGATTTTCACTGCTGTGTCTATGAGgagaaataaatgtgtaaaagaaACTCAGACTTTGTAATGAAATAATGTAGCATATATGTTAGAATTTAAATAGTCTGGCTCTTCAGTTTaacaatatttgcattaaactCATTCATAAtgattcaaatgtttaaatgtgattGTCAAGTGCAGCACTTAAATGTATCAGAAGATATACATCTACAATGTGTGCAAAAGTTACTTATTTACATGATctcttacattttatacatattattattctaGTTAGCATTGTGTCACAATTGCTCTCATTACAACAGTGTACATAAAAGGTGTATTGTACAGTTTTGcgatgaatagattttttttatgcagtgaGTTTATGCTGAACTGACAACAGCTTTAGTGATTAGAAATGTGCCTTTTACTCCATTTGCCGTTTTATTCACAGTTTGAAGAATGGTTCATGTGACTTttcttgcatgttttttaaattatttaggaGGCCTTTCTGCTGTTTATCTGCTGGgaacacattcatttttatgtaaatgtaaatgtcacaatttttggaaatgaacgaaaaaaaagtcaattggCCAGTGACTCAACCTTAATATTAGAATATGCGAAAAAATTCCACTGAAGAGTAACTTTAAGGAAACTGAAGGACTCTGTTGAGGCGGAGGTCACACACCAAGAAGGAAAACTTTGTAAAGATCATATTGCGCTTCTCTTTATTTCAATGCCTTTCTCAACAgtacaaacagcatttttaaaacaaattgatGATTAATGATGAAATATTGATGTTAAGAAAAACCTCAATTATCtgaaatttgaaataaacatcacacaaacaataaataaatactttgttgATTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248711.1 lncRNA upstream 83045 613852 ~ 616200 (+) True LOC122334030
TU271791 lncRNA upstream 94048 598728 ~ 605197 (+) True G183268
TU271787 lncRNA upstream 105436 593386 ~ 593809 (+) True G183264
TU271783 lncRNA upstream 106725 592260 ~ 592520 (+) False G183263
TU271786 lncRNA upstream 108250 590365 ~ 590995 (+) True G183263
XR_006248712.1 lncRNA downstream 4228 719313 ~ 720138 (+) True LOC122334031
TU271887 lncRNA downstream 37507 752592 ~ 753138 (+) True G183329
TU271888 lncRNA downstream 37507 752592 ~ 753274 (+) False G183329
TU271865 lncRNA downstream 68199 783284 ~ 786940 (+) False G183316
TU271866 lncRNA downstream 68199 783284 ~ 786940 (+) False G183316
XM_043231951.1 mRNA upstream 170970 516883 ~ 528275 (+) False amigo3
XM_043231950.1 mRNA upstream 172206 516883 ~ 527039 (+) True amigo3
XM_043231928.1 mRNA upstream 585029 106885 ~ 114216 (+) True LOC122334037
XM_043231929.1 mRNA upstream 638486 47425 ~ 60759 (+) False nicn1
XM_043231957.1 mRNA downstream 74147 789232 ~ 792555 (+) True LOC122334053
XM_043231956.1 mRNA downstream 78078 793163 ~ 801337 (+) True mccc1
XM_043231964.1 mRNA downstream 370719 1085804 ~ 1088890 (+) False dnajc19
XM_043231933.1 mRNA downstream 404622 1119707 ~ 1124593 (+) True LOC122334044
XM_043231922.1 mRNA downstream 412778 1127863 ~ 1145945 (+) True LOC122334032
TU271886 other downstream 34775 749860 ~ 752052 (+) True G183328
unassigned_transcript_2690 other downstream 43139 758224 ~ 758295 (+) True trnag-ucc_28
TU271863 other downstream 68199 783284 ~ 786940 (+) True G183316
TU271920 other downstream 130495 845580 ~ 846714 (+) True G183354
TU272093 other downstream 538866 1253951 ~ 1258660 (+) True G183477

Expression Profile