RNA id: TCONS_00011108


Basic Information

Item Value
RNA id TCONS_00011108
length 523
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_005244
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 15125409 ~ 15126049 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGCCAAGCACTGCAACAAGTCTCACAGATGTAGAATCACACAACTATGCAACAAGTCTCACAGATGTAGAATGACACGACTACAGACAGGGTTCTTATGGTTGTGAAAAACCTGGAAAGactttgacatggcattttccagaccTGGGACACATTGTGTGGATTTTAATGCTAAGCTGGTTGGCAagggggtgtttcccagtaatgggttgcacctggaagggcatccgctgcataaaacacatgatGATAAGTTGACAAGTTCAttcaacccctgattaataaagggactgagccgaaaagaaaagaataaatggTTGACAAGGTAGCCTTGACTTACATTGTCTAGTTCACTGGCGTTATGCTGGTTGGAAATGTAGCCAAGCCTCAAGCATATACTTCACTTGTGTTGAGGCATTCAGCAAGGTAGCCCAGGCATACAGTCTAGTTTACAATAGTGTTATACCCATTGGTAAGGAGGTGCACAAAGATAGAAGAACATGTAGTCAAACATATCCTGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010803 lncRNA downstream 5296 15117887 ~ 15120113 (-) False XLOC_005243
TCONS_00010802 lncRNA downstream 5296 15117887 ~ 15120113 (-) False XLOC_005243
TCONS_00011107 lncRNA downstream 5296 15118453 ~ 15120113 (-) True XLOC_005243
TCONS_00011106 lncRNA downstream 284850 14839787 ~ 14840559 (-) True XLOC_005240
TCONS_00010086 lncRNA downstream 981250 14138286 ~ 14144159 (-) True XLOC_005237
TCONS_00011109 lncRNA upstream 116518 15242567 ~ 15244000 (-) True XLOC_005246
TCONS_00011110 lncRNA upstream 319525 15445574 ~ 15450258 (-) True XLOC_005247
TCONS_00011111 lncRNA upstream 731683 15857732 ~ 15859869 (-) True XLOC_005250
TCONS_00010106 lncRNA upstream 1320179 16446228 ~ 16447272 (-) False XLOC_005254
TCONS_00010107 lncRNA upstream 1320181 16446230 ~ 16447270 (-) False XLOC_005254
TCONS_00010092 mRNA downstream 122790 14965600 ~ 15002619 (-) True XLOC_005242
TCONS_00010091 mRNA downstream 122846 14965587 ~ 15002563 (-) False XLOC_005242
TCONS_00010090 mRNA downstream 202454 14920088 ~ 14922955 (-) True XLOC_005241
TCONS_00010089 mRNA downstream 574332 14545475 ~ 14551077 (-) True XLOC_005239
TCONS_00010088 mRNA downstream 914342 14184465 ~ 14211067 (-) True XLOC_005238
TCONS_00010093 mRNA upstream 71808 15197857 ~ 15205087 (-) True XLOC_005245
TCONS_00010094 mRNA upstream 439295 15565344 ~ 15567104 (-) True XLOC_005248
TCONS_00010095 mRNA upstream 442712 15568761 ~ 15584479 (-) False XLOC_005249
TCONS_00010096 mRNA upstream 442714 15568763 ~ 15620090 (-) False XLOC_005249
TCONS_00010098 mRNA upstream 936511 16062560 ~ 16084835 (-) True XLOC_005251
TCONS_00010077 other downstream 1475119 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010060 other downstream 2790078 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010022 other downstream 5454272 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010021 other downstream 5477064 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010016 other downstream 5608456 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010097 other upstream 455271 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010103 other upstream 1282259 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010104 other upstream 1289761 16415810 ~ 16434838 (-) False XLOC_005253
TCONS_00010105 other upstream 1305767 16431816 ~ 16434835 (-) True XLOC_005253
TCONS_00010111 other upstream 1367303 16493352 ~ 16493468 (-) True XLOC_005255