RNA id: TU275063


Basic Information

Item Value
RNA id TU275063
length 547
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G185352
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 137928 ~ 138636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgagtgagagtgtgtgtgtggctCACTTTAGCAGACAGGCCGATGTTGTCCCAGTACGGCGAGGGAAACTCCAGTCTTCCCAGTAAGATCTGCTCAAACAGCTCCTCCTGCTGGTTCCTCTCGCTGCGGAACGGAGGAAAACCACACAGCAGGATGTAGGTGATCACACCCGCCGCCCAGATGTCCACCTTCAGCCCGTACCTGCTCTCAGAAGCAGACAAAACCCTAGAAATGCTGAAAAAGGACACTAAGTGAAACGGCTAGGTCGGTCGTTTAGAGTTTTACCCGCTCTCTGCGATGATCTCCGGCGCGACGTAAGTCGGTGTCCCACAGACGGTGTACAGCGGTCCCTCCACCACCGTCGCCAGCCCAAAGTCACCCAGCTTCAGAGACTTAGTGCCGTCGGGATActcacacacctacacacacacacacacacacacacacacatacatatatatctatctcatcattatacatccctgtcattgtattcttctactttatactcttcagtgctttgatacaacctgtattgttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275033 lncRNA upstream 1670 134637 ~ 136258 (+) True G185333
XR_006248768.1 lncRNA upstream 88140 49034 ~ 49788 (+) True LOC122334578
TU275024 lncRNA upstream 89184 48227 ~ 48744 (+) True G185324
TU275021 lncRNA upstream 91565 45987 ~ 46363 (+) True G185321
TU275018 lncRNA upstream 92859 44279 ~ 45069 (+) True G185318
TU275048 lncRNA downstream 18308 156944 ~ 158197 (+) True G185345
TU275076 lncRNA downstream 26880 165516 ~ 167319 (+) True G185363
TU275150 lncRNA downstream 63406 202042 ~ 263099 (+) True G185407
TU275183 lncRNA downstream 164718 303354 ~ 310514 (+) True G185432
TU275199 lncRNA downstream 245901 384537 ~ 385010 (+) True G185443
XM_043232530.1 mRNA upstream 3576 122174 ~ 134352 (+) True wu:fy63c09
XM_043232526.1 mRNA upstream 35753 94764 ~ 102175 (+) False LOC122334533
XM_043232525.1 mRNA upstream 35753 94766 ~ 102175 (+) True LOC122334533
XM_043232528.1 mRNA upstream 45815 83329 ~ 92113 (+) True ednrab
XM_043232562.1 mRNA downstream 47542 186178 ~ 193997 (+) True LOC122334561
XM_043232533.1 mRNA downstream 81315 219951 ~ 234238 (+) True LOC122334540
XM_043232534.1 mRNA downstream 81315 219951 ~ 234238 (+) False LOC122334540
XM_043232532.1 mRNA downstream 98625 237261 ~ 245179 (+) True toporsb
XM_043232535.1 mRNA downstream 106657 245293 ~ 257813 (+) True ddx58
unassigned_transcript_2857 other upstream 86094 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 413319 551955 ~ 557861 (+) False plod3
TU275262 other downstream 446883 585519 ~ 586595 (+) True G185478

Expression Profile