RNA id: TU275141


Basic Information

Item Value
RNA id TU275141
length 1183
RNA type TUCP
GC content 0.51
exon number 11
gene id plod3
representative False

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 538355 ~ 590185 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCTATGCTCCTGAGATTCATGCTTTAGTGAAGCAGTGGAAATACAAGGACGACGATGACGACCAGCTGTTCTACACACGCATCTACCTGGATAAAGAgcagaggaggaAGTTCAACATCACTCTGGACCACAAATCCCACATTTTTCAGAATCTCAATGGAGCTATagAGGAAGTGGTCCTGAAGTTTGAGAAATCCAGAGTCAGAGCACGGAACGTGGCCTATGACACACTTCCTGTCGTTATCCATGGCAACGGTCCGACTAAGctccaGCTGAATTATCTGGGTAACTACGTGCCGACGGCGTGGACGTATGAACACGGCTGTGGGATCTGTGACGATGATCTGCTGGACCTGAGCGGTCTGTCTgacGAGGAGATGCCGCTGGTGTATGTGGCCGTGTTTATCGAGCAGCCGACGCCGTTTCTGGAAGAATTTCTGGAGAGACTCGCAACTTTGAACTACCCACACACACGCTTACGACTCTTCATACACAACAACgttGTGTATCACGAGCAGCACGTAGAGCGCTTCTGGACTCGCCACCGCTTGCTCTTCCCTGGGGCGAGACTCGTCGGACCGGAAGAAAACCTCAAACAAGACCAGGCCAGGAACATGGcagtcgAGGCGTGTAAGAAGGACGTCTCCTGCGATTATTTCTTCAGCATCGACTCTGATGTTGCTCTGACCAATTCAGATATTTTAAGGATCCTTATTGAAGAGAACAAAGCTGTGATCGCTCCCATGCTGTCTCGACACGGCAAGCTCTGGTCCAACTTCTGGGGAGCTCTGAGTCCGGAGGGTTTTTACTCGCGCTCGGAGGACTACATCGACATCGTCCAGAGcaagagagtTGGACTGTGGAACGTTCCCTACATCACTCAGGTCTATCTTCTCCGTGGAGAGACTCTCCGCTCTCGTCTGGCCGCCGTCTCTCTCTATCAGCAGGAGGGCATGGACGCAGACATGAGCTTCTGTAAGAGCGTCCGGGAGCAGGGCATCTTCATGTTCGTGTCAAACAGGGATGAGTTTGGCCGTCTGGTCTCCTCCACCAATTACAACATCAGCCGTCTTCATCCAGACATGTGGCAGATATTCGACAACCCAATGgaCTGGAGAGAGAAATACATCCATGAGAATTACTCCAAGATTTTTGAAGATGATGAGAAGATCGTTGAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248767.1 lncRNA upstream 6087 542329 ~ 545868 (+) True LOC122334568
TU275144 lncRNA upstream 7342 541629 ~ 544613 (+) True G185405
TU275145 lncRNA upstream 7342 541629 ~ 544613 (+) False G185405
TU275232 lncRNA upstream 20934 472271 ~ 531021 (+) True G185457
TU275231 lncRNA upstream 20934 494068 ~ 531021 (+) False G185457
XR_006248763.1 lncRNA downstream 24191 582052 ~ 583560 (+) False LOC122334532
TU275258 lncRNA downstream 24213 582074 ~ 584568 (+) True LOC122334532
TU275259 lncRNA downstream 24213 582074 ~ 584568 (+) False LOC122334532
TU275260 lncRNA downstream 24213 582074 ~ 593003 (+) False LOC122334532
TU275137 lncRNA downstream 32454 590315 ~ 600124 (+) True G185402
XM_043232571.1 mRNA upstream 9942 534160 ~ 542013 (+) True LOC122334567
XM_043232578.1 mRNA upstream 87754 452926 ~ 464201 (+) False tfr2
XM_043232577.1 mRNA upstream 87754 452929 ~ 464201 (+) True tfr2
XM_043232576.1 mRNA upstream 87755 452931 ~ 464200 (+) False tfr2
XM_043232579.1 mRNA upstream 87756 451287 ~ 464199 (+) False tfr2
unassigned_transcript_2857 other upstream 500121 51763 ~ 51834 (+) True trnaq-uug_24
TU275262 other downstream 27658 585519 ~ 586595 (+) True G185478

Expression Profile