RNA id: TU275145


Basic Information

Item Value
RNA id TU275145
length 1449
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G185405
representative False

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 541629 ~ 544613 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atacattttttttttaatattcacagaTAAATTGAAACAGCGTtgatttgaaacagaaatcttttgtaacattataaacgtcTTACTGTCAGTTTTAAAGATCAATTTAATGATCCTcgatgaataaatgtattcattcaatCTCACCGACGTCACACTTCTGAACAGTAGCTTTAATTAagaatcttttttattataatttatatattttattatttttaattaattgtgtaatttatgCTCTTATTTATCTTATTAAGATTGTACATTGCCCATaaacttaattaattaaaaaggaaagtaTAGATGATTTATACATACAGCTTCATACTTGTTTGAagcaaataaatgttcattaataAACTTGCCAAtgattagctttttttaattctcagtAATCTGTGAAGCGTTTTGATGTATCATTTGTATATTCACTTTACATTCACATTGCAATGGTACTAGATCATCAGAACTGATTTAAACACAGCGCAGCATTACTATACAGTAACATCATTACAACATTACTGtaacaacacaaaaatgaacatcCTCACCCTCGCTCCGTCTGAGATCTATCTAAACCATGactacaaaataaagtgaattgTTTGGTTGATTATACACAGAAGATGGTGAGTTTTTATATTCCCGCTGATGTGGTTTAGATGGAGGAGGCGTGAGCTTTGCAGACGTAGCGGTAGTGCCGAGAGCAGTGGTCATCGTTATAGCGTCCGTCGTGATGAAAGTGAGCGCAGTCTTCTCCGCCTCCCAAACCATGATGCTTCCAGTCATCCGGCTGACCGGGCATCCattcactgcacacacacacacacacacgtgatgaGCGCTGGAGTGTGAGCGAGGCTCCTGGcggcgcacacacactcacctcctgATGATGGTGTAGGGCGTCCTGTCCAGCCATTCCCACTCACCGGTGCGTGCGTCACTCAAACCCAACCAGTAGTACAGAGGCCTGGTCTTACTGACCACGaaagtctTCTGGTTTGCTTTTTAAGACGAGTAACTCGGATCTCTTCTTCTTACACTCATCTTTGGCTGCGTCCCACGGCATCCCATCATTAGAGAAGAAATAACAGTGTGAGGAGAAGAGCAGCCATCCTTCAGGACAGCACAGCTCCTGCgtgtctgaacacacacacacacacacacacacacacgtgtgacTCTCTGCACGAGACACCAGGACACACTACTACAGCATCACTTACTGTTGTTCTTTAACTTGTTAATCTGGCATTTCAGATCTGAAACTCTGTCCCGGAGCTCCTGCACTGAATCCAAcactaacaaacacacatatattaagaCTGATTTTGCGTTGTTTTGTCTggatgtgtatttgtgtgctaCTTACTATTATTAAGCATGCTTTCCATCGTCACTTGATCAAACTCCAGACTGCTGATCTCCAAAAGCAGTTTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275232 lncRNA upstream 10608 472271 ~ 531021 (+) True G185457
TU275231 lncRNA upstream 10608 494068 ~ 531021 (+) False G185457
TU275229 lncRNA upstream 37607 472271 ~ 504022 (+) False G185457
TU275216 lncRNA upstream 126289 413765 ~ 415340 (+) False ctc1
TU275211 lncRNA upstream 132564 407460 ~ 409065 (+) False G185446
XR_006248763.1 lncRNA downstream 37439 582052 ~ 583560 (+) False LOC122334532
TU275258 lncRNA downstream 37461 582074 ~ 584568 (+) True LOC122334532
TU275259 lncRNA downstream 37461 582074 ~ 584568 (+) False LOC122334532
TU275260 lncRNA downstream 37461 582074 ~ 593003 (+) False LOC122334532
TU275137 lncRNA downstream 45702 590315 ~ 600124 (+) True G185402
XM_043232578.1 mRNA upstream 77428 452926 ~ 464201 (+) False tfr2
XM_043232577.1 mRNA upstream 77428 452929 ~ 464201 (+) True tfr2
XM_043232576.1 mRNA upstream 77429 452931 ~ 464200 (+) False tfr2
XM_043232579.1 mRNA upstream 77430 451287 ~ 464199 (+) False tfr2
XM_043232572.1 mRNA upstream 106704 431117 ~ 434925 (+) True LOC122334569
XM_043232523.1 mRNA downstream 4072 548685 ~ 560341 (+) True plod3
unassigned_transcript_2857 other upstream 489795 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 7342 551955 ~ 557861 (+) False plod3
TU275262 other downstream 40906 585519 ~ 586595 (+) True G185478

Expression Profile