RNA id: TU275199


Basic Information

Item Value
RNA id TU275199
length 344
lncRNA type intronic
GC content 0.42
exon number 2
gene id G185443
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 384537 ~ 385010 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attcattcagacatttttgatgATGTCCGAGAGCTATCTGACTCTCCAAAGGCAGCAACACAACTAAAATGATCCAGggccagaaacatagtaaatagATTGGTAAAACAGTCAtgtGATATCAGCTTCAGTTTTGTGATGCTACCAGGATGTTACTTGTGTGTCGTTCTGTTTGCCCTTATTTggtccttcctgttcctgtcttCATTGTTGTGATTATTGGTTAATTAGTCCTCACCTGTGCTTGCTCACCTGTTTCTGTTCTCCCAGTTGTGTCTTTGTGCTTAAATACCCCGTCTCTTGCGTTCTCCCCTGTGGGTCCTTCATGTTTACTAGTGTATTAT

Function

GO: NA

KEGG:

id description
ko03410 Base excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275183 lncRNA upstream 74023 303354 ~ 310514 (+) True G185432
TU275150 lncRNA upstream 121438 202042 ~ 263099 (+) True G185407
TU275076 lncRNA upstream 217218 165516 ~ 167319 (+) True G185363
TU275048 lncRNA upstream 226340 156944 ~ 158197 (+) True G185345
TU275063 lncRNA upstream 245901 137928 ~ 138636 (+) True G185352
TU275210 lncRNA downstream 22450 407460 ~ 409065 (+) True G185446
TU275211 lncRNA downstream 22450 407460 ~ 409065 (+) False G185446
TU275216 lncRNA downstream 28755 413765 ~ 415340 (+) False ctc1
TU275229 lncRNA downstream 87261 472271 ~ 504022 (+) False G185457
TU275232 lncRNA downstream 87261 472271 ~ 531021 (+) True G185457
XM_043232545.1 mRNA upstream 13242 361902 ~ 371295 (+) False LOC122334546
XM_043232544.1 mRNA upstream 13242 361908 ~ 371295 (+) True LOC122334546
XM_043232540.1 mRNA upstream 22503 341689 ~ 362034 (+) False LOC122334545
XM_043232543.1 mRNA upstream 23380 341688 ~ 361157 (+) False LOC122334545
XM_043232539.1 mRNA upstream 23380 341689 ~ 361157 (+) True LOC122334545
XM_043232582.1 mRNA downstream 3184 388194 ~ 406228 (+) True sh3gl2b
XM_043232573.1 mRNA downstream 28735 413745 ~ 427951 (+) True ctc1
XM_043232572.1 mRNA downstream 46107 431117 ~ 434925 (+) True LOC122334569
XM_043232579.1 mRNA downstream 66277 451287 ~ 464199 (+) False tfr2
XM_043232578.1 mRNA downstream 67916 452926 ~ 464201 (+) False tfr2
unassigned_transcript_2857 other upstream 332703 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 166945 551955 ~ 557861 (+) False plod3
TU275262 other downstream 200509 585519 ~ 586595 (+) True G185478

Expression Profile