RNA id: TU275216


Basic Information

Item Value
RNA id TU275216
length 1000
lncRNA type sense_over
GC content 0.48
exon number 2
gene id ctc1
representative False

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 413745 ~ 427951 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAAGAAGCGCGCGAGTCCCGGTGTTTATGTTTCATATTTGCGCTCGTATTGttataaatacaacaaatggGACGCTGACGGGGGACTGATCGTGTCCGGAAGTATGGAGGAGTTTCTGAAGCACTTTAAAAACCACAGCAGAGCGATGGTTATAAGCGACAGCTAAAGGAAACCCCAAATTCAGCTTCTCAGAAACATTAGAATATCACTTGAGACCGAGACCAAGAAAGGGTTTTTGGAGATATGGAGACATGGCCCTCAGCTCTTCTTCATGGTTGGGTCTGGAGTATCTCTTCTCCCTGGATTTCCTTCGGGGTTAAGCTCAGGCCGATGAAGAAGAGGGACAGCATGCTCCTTAAACCAGGGACCGAGGATGAAATCTTCATCTCCATAAGGTTGGTCAGCCGCAGCATGAAGCATGAAGCGCTCGAAAACCTCCCGCTATACGGCTGcgttgacctttgacctcagagAACACAGCAGATGACACGAACCCCAAACCATCAGTGACTGTGGACCTCAAGCAACGTGAGACTCTTCCTCCAGACCCTGATGTCCAGCAAATGCTAAATTGACTTCATCAGAGAACATTTCTCTGGATCGCTCAGCGGCAGTCCAGTCCTGTTTGCTTCTGACGCTGTGTCTCGACTCGAGGGCCGGGCGGCTGAGACCCATGTCTTGTTCTTGAAGCAGTCCCCTCTCTGTGAATCTCctccacatttttgaatgggttttgtcTCACGatcttttccttcccttctCCTCTCTGTTGATGTTCTTGGACACAGAGCTCTGAACCTCTTTTGTGTCTCGTCCTCCTCGTTCAAGGTGTCAAAGGTCATCACCTCGTGATCCTGTATCTACAGAACCAGAGCGAGAGAGCATTTAAAGGCCAGGTGTTTTGAGTTCGTCGTCTGATCCGAGCGTGTCTTCAGTATTCAgccttttcacaatattctcATTTTCTgagatgctgtatttttttcatcagttgTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275210 lncRNA upstream 4700 407460 ~ 409065 (+) True G185446
TU275211 lncRNA upstream 4700 407460 ~ 409065 (+) False G185446
TU275199 lncRNA upstream 28755 384537 ~ 385010 (+) True G185443
TU275183 lncRNA upstream 103251 303354 ~ 310514 (+) True G185432
TU275150 lncRNA upstream 150666 202042 ~ 263099 (+) True G185407
TU275229 lncRNA downstream 56931 472271 ~ 504022 (+) False G185457
TU275232 lncRNA downstream 56931 472271 ~ 531021 (+) True G185457
TU275231 lncRNA downstream 78728 494068 ~ 531021 (+) False G185457
TU275142 lncRNA downstream 123015 538355 ~ 590185 (+) False plod3
TU275144 lncRNA downstream 126289 541629 ~ 544613 (+) True G185405
XM_043232582.1 mRNA upstream 7537 388194 ~ 406228 (+) True sh3gl2b
XM_043232536.1 mRNA upstream 26358 371427 ~ 387407 (+) True si:ch73-168d20.1
XM_043232545.1 mRNA upstream 42470 361902 ~ 371295 (+) False LOC122334546
XM_043232544.1 mRNA upstream 42470 361908 ~ 371295 (+) True LOC122334546
XM_043232541.1 mRNA upstream 52608 341992 ~ 361157 (+) False LOC122334545
XM_043232572.1 mRNA downstream 15777 431117 ~ 434925 (+) True LOC122334569
XM_043232579.1 mRNA downstream 35947 451287 ~ 464199 (+) False tfr2
XM_043232578.1 mRNA downstream 37586 452926 ~ 464201 (+) False tfr2
XM_043232577.1 mRNA downstream 37589 452929 ~ 464201 (+) True tfr2
XM_043232576.1 mRNA downstream 37591 452931 ~ 464200 (+) False tfr2
unassigned_transcript_2857 other upstream 361931 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 136615 551955 ~ 557861 (+) False plod3
TU275262 other downstream 170179 585519 ~ 586595 (+) True G185478

Expression Profile