RNA id: TU275229


Basic Information

Item Value
RNA id TU275229
length 2145
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G185457
representative False

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 472271 ~ 531021 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATGGAGTCAATTAACGTTTATTATCCctgtaaaacaataatgaaagaaattaatgagACACAGGTGAGCAACATAATTAGCAATTACAAtcagaaatgagaaaatgtgcagaaacgataaaatccattaaaacaaaactaaagcaTGTTTAAACAGCATATCAAGGTGCATGTAATTACACGGGATTATAAATGCAGTCATTGTAGATTGATTTCCCAGAACATATGAGTTCACAGATGTAAATGTAGGCGCTAAATAATATGcactaaataaagcaaaaatgacaaaaagcacagtaaatgtaaactgaatcgcataattaaacttaaacatGACAGAAGTTCAAACAGACATGAAAGCTATGTTCACACTGCATGCAGAATTTTTACTTAGATCTGATTTTATTGTATAGCTGTTCACATGATTGTTTTGAACGTGACGAGTTGTTTCTCCGAACTGGTCCAAAACTAGCCCAACCATGTTCAGGGAGGTGAGTGTCCCATTTGTGGGGTCGCGTCAACCCACCAATTGAAAAACAACCCGCGGCAACAGAGGACAAACTAGCCCGATTCTGTGGGGAAAATGTGGATTTGGCAACACCTGCACAATGCGggcaccttattgtaaagtgttaccttcatattaaatagcaatgcaatattttttttattattgcattttacaatGCAACAGAATCAGATATAACTAATTGTCCTAAGCTATTATTATCAGAGCATGTGAGCAGTGTTGCCATGGAGGTTACCGGGCCGTGTCCTCCGTGCCACCAGAGGGCGGTCTCGAGTATTAACCGGTCCACTTCCCATACTGCCTCTTACCTGGGGCTGAATACACACCTGTCCCCTTCGCCACGCCCACTGCTCAATACTTCCCCTATTTAAATGGACTAGTAAGTTCTACCTGTGCGAAGTCTTGATTTGCTACGGTGATCATTTCTGAGGGTTTACCATTGTATTCTCTGCCTTGTTATCGACCCCGGACTGTCTATCTGCTCTCTGGTGGTTCTCTGCCTGCCCCAGACCTTCTGCTCGTCTGTTCTGCTATTTGGATCGTCCTCCTTGCTCCGTTTTGCCGTAGTTTTGTCCCTGTCTGTACGACCAAGCCAATAAACGCTGCATATGGATCCCACTCAGCCTAGCGCCAGCTCTACTACATCGAGTAACAGCACAGGAGCGCTACTGTAAACATGAACAAGTACTAAACATGAGGGGTAGGCTGCTATAAGAGCTGAAGCGCATTCATTGAGCGAAATACTGAGCAGAGAGTCGGACTGcgactaataaaatattacatagcCTATTTTTCGGCTCGTATTTTTGGCGTTTTCTCTCTCGGCGGATAAATTTCAGTGCGtctctaaaaatatatgtacattctgtatatattgtgaaaaaacTGTTAGACATTGACAGCTTGATTGATTGTTATTTGACTCAAACACACAGTTGGTAATTACTTGTACATTTTCGGTCTGTTATTGGTTACAAATGACCAAAAACgaaacttttatttagaaaacatttaaacaaaatgcagatatttttgattatattttagtgCGTAATTTACTGGCATTGTGTGAATATGGAATAAGAAAGTGATGACCCTCTAATTATAGGTATTTTGAAATagtactaaatatttataatttgggATTCCATGTGATCAGTTTCTCTCCAGTGATCACTTGACACAGATGAAGTTGTTTCTGTCAGTTTCAGGGAGGCTGATCCAGAAATTATCGTTGGTCCGAATGGCTCCGGATCTGATCGTATTAACACAGTCGTCCAGTCCGGTGTCGTAATCAAGAGTCCACCGATCGTAGCAGATGGTCTGACCGTTGATCCAGAACCAGATTCCCACGATGCAGGAGTGACGCAGACCCAGCCACACGTGATTGGACGAGGCTCTCGAGGTCACATTCATCACCCGTCGCTGTATCTGCTCCGAATATACCGACACCAGGTccatgtctctgtctctgcagTATCTCAGAGCTTCAGTCCACGTCTTATTCTCTCGGATCAGAACCAGTTTATCTGTAACACAAACAAATCAGCATACAGAACTTGAAGTCTTTACCGTAAATACAGGATCCAGTGCCATGtacttttagaattttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275216 lncRNA upstream 56931 413765 ~ 415340 (+) False ctc1
TU275210 lncRNA upstream 63206 407460 ~ 409065 (+) True G185446
TU275211 lncRNA upstream 63206 407460 ~ 409065 (+) False G185446
TU275199 lncRNA upstream 87261 384537 ~ 385010 (+) True G185443
TU275183 lncRNA upstream 161757 303354 ~ 310514 (+) True G185432
TU275142 lncRNA downstream 34333 538355 ~ 590185 (+) False plod3
TU275144 lncRNA downstream 37607 541629 ~ 544613 (+) True G185405
TU275145 lncRNA downstream 37607 541629 ~ 544613 (+) False G185405
XR_006248767.1 lncRNA downstream 38307 542329 ~ 545868 (+) True LOC122334568
XR_006248763.1 lncRNA downstream 78030 582052 ~ 583560 (+) False LOC122334532
XM_043232578.1 mRNA upstream 8070 452926 ~ 464201 (+) False tfr2
XM_043232577.1 mRNA upstream 8070 452929 ~ 464201 (+) True tfr2
XM_043232576.1 mRNA upstream 8071 452931 ~ 464200 (+) False tfr2
XM_043232579.1 mRNA upstream 8072 451287 ~ 464199 (+) False tfr2
XM_043232572.1 mRNA upstream 37346 431117 ~ 434925 (+) True LOC122334569
XM_043232571.1 mRNA downstream 30138 534160 ~ 542013 (+) True LOC122334567
XM_043232523.1 mRNA downstream 44663 548685 ~ 560341 (+) True plod3
unassigned_transcript_2857 other upstream 420437 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 47933 551955 ~ 557861 (+) False plod3
TU275262 other downstream 81497 585519 ~ 586595 (+) True G185478

Expression Profile