RNA id: TU275258


Basic Information

Item Value
RNA id TU275258
length 1706
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id LOC122334532
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 582052 ~ 593003 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGACTTGAGCTGAACCGAGCTGAACACTTTCTCACAGCGACCGGATCAAACATACAGCAACTAATAACTCTATAGTAGCCTTTAGTTGAGAAGACCCGCTTCTGTCCATCTTTTAAGTCTAGAAATCTATAACTTGAGTTGATCAGGACGGCGCATGCTTGGTCAGCGATGGAGGAAAGCAAGACTGATCACGTAACCCCGCCCACAACCCCAAACAAAGCCACGCCCTCTCCGCCAAGGTCCGATGAACGGCCGATGGGTTTGAGCAGCCCGGAGTTACTAAAAGAACTGAAACAACCGCACGCGCTCAAACACGTCCCGCTCACAAGGGACTGACCACGGTCTTCTGCGGACGAGGACGACAGAATCAGGAGGAGAGTCAGACAAAAAGCCTGCACTGAGAGGCCGGCGGTCACAGTGACCGTTCGGCGGGGATTACAGCTGATTGGCCGTTTGAGCCGCCTGTCAGGGATAAGCCCCGCCCCCTGGGTGGAGCTGCTCTGGTTATGAGGATCTTCCACATGTTTGTGTGCGAGTGTGAACGCAGTCTGAGGtttcagcagtgtgtgtgtgtcatgtcagatatgaaataaaatgatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatttgaattgaaattaaTGGAAAAGTCTACTGAATTGCATTTGAGAGGAGTTTAACAGTAATACAGGAGAAGTTTGATTAGTAGAACAGACCGCTTCTGTATGTGTGTCACAACCAATAAACTTCATCATAATTTGGAATAATTTTGTCAATTTATTCTCAGATTAGACCCAATTCTTTTAGTTCAACACTGTCTAGACAATCAACAACCGTCAAACAGATTctaataaagatatatttttatagaatggatcgtttaatataatatacaatatattttgtatgtataagtaaaactatatatgtgtgtgtgtgtgtgtgtgccagctTTCTAAATGTTAAGAGACGTGTTTGCTTcaaatggtttattttcatttaatataatgaaatataaatgaaattgtCATTTCTACAGggaacatttcaaaaacatttaatatcatGCAATGTTTTAGCattggtgttatttttttaattctagacttttttccatttttatttattttttaagcaattttgtctgccatttttattcatttttaaatgtctatagtcttttattgtttattttttattattattagttattttagtactttgaCTTAAACTGAGCCAAAatggcaaatataaaaaatataattaaagttacctgaaataaaatgaaaatttttctctttttttaattaccattatggtttagtttaacttttttttttaatttataggtaaaatgaattgtattattaatttatagcTATTATCAACAGCAATAACCCTGGTTTCTGGAAGCCCTCCACGTTGTGTGTTTTCGGACTCACGTCAGATTGAGGTATTTCCGTGTCATGTTTGCGCAGCGGTTCAAAGGTCACGCAGCTCTGAGCTGGTCTCTGATCTCCAGGAGTGTTAGCGAGCGTGTCGGAGGACGAGAGAATGCCATCTCTTCTGCGTCGCTGTGTGCTGAGCGCGCTCCTGATGAGTCTGCTGCTGTTCCTCAGCTCTCTGTGGCTGCCTCAAGGAAGTGTTCAGACCTGTGAGCAGTCGTGGAGGCCCTGTCTAAGCG

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248767.1 lncRNA upstream 36206 542329 ~ 545868 (+) True LOC122334568
TU275144 lncRNA upstream 37461 541629 ~ 544613 (+) True G185405
TU275145 lncRNA upstream 37461 541629 ~ 544613 (+) False G185405
TU275232 lncRNA upstream 51053 472271 ~ 531021 (+) True G185457
TU275231 lncRNA upstream 51053 494068 ~ 531021 (+) False G185457
TU275137 lncRNA downstream 5747 590315 ~ 600124 (+) True G185402
TU275138 lncRNA downstream 5747 590315 ~ 597930 (+) False G185402
XM_043232523.1 mRNA upstream 21733 548685 ~ 560341 (+) True plod3
XM_043232571.1 mRNA upstream 40061 534160 ~ 542013 (+) True LOC122334567
XM_043232578.1 mRNA upstream 117873 452926 ~ 464201 (+) False tfr2
TU275141 other upstream 24213 551955 ~ 557861 (+) False plod3
unassigned_transcript_2857 other upstream 530240 51763 ~ 51834 (+) True trnaq-uug_24
TU275262 other downstream 951 585519 ~ 586595 (+) True G185478

Expression Profile