RNA id: XM_043232525.1


Basic Information

Item Value
RNA id XM_043232525.1
length 2442
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC122334533
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 94764 ~ 102175 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGGTTCGTGATTGGCCCGGCGGGGTGGTCCCGCCCTGCTCGTGAGCGGCGTCCTCGCTGTCGGTGTGAGGCGCGGCGGCGGCGGCTCGCTGTCGGTGAAGATGCCGGTGTGGCGGCGCTGGATCCGGCCGCTCGCCGTGCTGCTGTTCGTGCTCGTGCTCGCGGTGGCGCTGCCGCTGTGCGCGTGGGAGCTGCGGAGAGCCGAGGTGGGCACACACACTAAAGCATGGTTCATcgcaggtgtgtttgtgtgtttgacgATCCCTATTTCACTATGGGGGATTTTACAACATCTGGTTCACTACACACAACCTGAGCTACAGAAACCCATCATCAGGATTCTCTGGATGGTTCCCATATACAGCTTAGACAGTTGGATCGCGTTAAAATACCCCAAGATCGCTATCTACGTGGACACGTGTCGGGAATGCTACGAGGCGTATGTCATCTACAACTTCCTGATGTTCCTGCTGAACTTCCTGGAGAATCAGTATCCCAGTCTGGCGCTCATGCTGGAGGTTCAGGAGCAGAGAGCCCTGCTGCCCCCGTTCTGCTGCTGCCCGCCCTGGGCCATGGGAgaGGTTCTTTTGTTCAGATGTAAGCTTGGAGTTCTGCAGTACACAGCAGTGAGGCCTCTAACCACCATCAtcgcactTGTGTGTCAGCTGTGTGGAGTTTATGATGAAGGTAATTTCAGCTTCAGAAATGCCTGGACGTACCTGGTTATCGTCAACAACGCCTCACAGCTGTTTGCGATGTACTGTCTGCTGCTGTTCTACCGAACGCTGAGAGAGGAGCTGAAGCCTCTGAGACCCGTCAGCAAGCTGCTCTGCGTCAAACTCGTCGTCTTTGTGTCCTTCTGGCAGGCTGTGCTGATCGCTCTGCTGGTGAAGGTCGGAGTgatttcagacaaacacacttGGGAGTGGGACAGTGTGGAAGCTGTAGCCACGGGCCTacaggactTCATCATCTGTCTGGAGATGTTTTTGGCGGCGATCGCTCATCACTACAGTTTCAGCAGTCGTCCGTACGTGCGTGAGGATGATGAAGGCTCGTGCTTCGACTCGTTGCTTGCCATGCTGGACGTCTCAGACATACGTGCAGACATCGCAGAGCAAGTGCGCAACGCCGGCCGTACGGTGTTCGGTCGTCCTCGCAAGCTGTTCTTCGGCTCTGAAGGGGACGTGGTTCAGGGTGAGCACACCGGTCTCCTCGCTGAGACGCCCCACGAGCGCCACTCAGTCCCCGCCTCCCCGCAGGGGCGGTACCAGGGGCTGGGCTACACAGACACGCCCCACTCAGTCTCCGCCCCCGCCGGCTTCACATCCTCGTCCTGGGAGAGTGACAGCGACTCGGCCCATGcagcggccaatcagagcacaggaACAGAGTCCTAACAAACGGTGCGGTGAGGCTACGTGACAATacagacaataaataataataataataactggaTGACAAATAGTAATcactaattattaaataatctcTATTTAATTCTCCATGAAAGATTgaagtaaaacagcatttttcttCAGCAAACCTACTGGAACCAGtgttattatagtaatatttataatgacaaatagttttcaataatattttgaattagctttcatttttaaatacttttctttttttaatatgtagacattttatgtgctttcgtcatttattttaatcacttttttatcagtttactTAAAATGTGTAGTGTAaagatttgtaattttattttatttaatctttaacAAAAGTGTTCCTAATAGTTTTTAGCTTTTCATAATAACTCCGACTGAAACCCTGTATTTGttcagatttttatattattatttattattttgtcagcttgtctttttatattattattattattattaggccaTAAAAGTGCCAGAAATGTAAATCCCAGAGACTCTCAACACAAGGTGGAACTTGTAAAAAtcttatacaaaataaatgtgtgcttgATGTCAGattgatgtgaaaaaaaatcttcacaCAGACCCATAAAATAAAGGAGCCCTGTTCTTATTCTGTGCAAATATTGTAAACGTGTgtaaattgtttaatatatatatatatatatatatatatatatatatatataattgattaaTTTCATGATGTGGCTCAAGagctttaataatattaataatattgataatcGTGTTATTATGGAATTcaaatgtgtgtgaatgttgttttttccatttaagCTGCTTATataattcttattatatattataaatacatatcacACATACACGAATACTGCATACACCACAAACGGGTTTATTTACCACCAGGGGGCagaataatattacaaaatctcATATTAAACTCGACCCATATTTCTGTTGTCCTCCTTGTGACTGGTTgttctgtaaaaatgtgtacaaaacTTTACATTGACATAAAACACTTCAAAAAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248768.1 lncRNA upstream 44978 49034 ~ 49788 (+) True LOC122334578
TU275024 lncRNA upstream 46022 48227 ~ 48744 (+) True G185324
TU275021 lncRNA upstream 48403 45987 ~ 46363 (+) True G185321
TU275018 lncRNA upstream 49697 44279 ~ 45069 (+) True G185318
TU275033 lncRNA downstream 32462 134637 ~ 136258 (+) True G185333
TU275063 lncRNA downstream 35753 137928 ~ 138636 (+) True G185352
TU275048 lncRNA downstream 54769 156944 ~ 158197 (+) True G185345
TU275076 lncRNA downstream 63341 165516 ~ 167319 (+) True G185363
TU275150 lncRNA downstream 99867 202042 ~ 263099 (+) True G185407
XM_043232528.1 mRNA upstream 2653 83329 ~ 92113 (+) True ednrab
XM_043232530.1 mRNA downstream 19999 122174 ~ 134352 (+) True wu:fy63c09
XM_043232562.1 mRNA downstream 84003 186178 ~ 193997 (+) True LOC122334561
XM_043232533.1 mRNA downstream 117776 219951 ~ 234238 (+) True LOC122334540
XM_043232534.1 mRNA downstream 117776 219951 ~ 234238 (+) False LOC122334540
XM_043232532.1 mRNA downstream 135086 237261 ~ 245179 (+) True toporsb
unassigned_transcript_2857 other upstream 42932 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 449780 551955 ~ 557861 (+) False plod3
TU275262 other downstream 483344 585519 ~ 586595 (+) True G185478

Expression Profile