RNA id: XM_043232533.1


Basic Information

Item Value
RNA id XM_043232533.1
length 3630
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC122334540
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 219951 ~ 234238 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGGTGAAGGACGCATGTGCGAAgccttcatcatcttcatctgcTCTGATTCTCCTCATTAGAGTCTGGGAGTCTGCGGAGCATCATCACAGGAGACATGAGATCCTGCTGCGTCTGCCTGgtgtgttttgtggtgtgtgtgattGGATGGCATGACCTGGATAACAGCGAGTATGACTGCTGGCCGCTGGACAGACCTGACGAGCTCAACATGATCGACTGCGGAGGTCTAGAGATGGCGTGGGTTCTGCGTCCTCCAGAGAAGGTTCTGAGTGGTGAAGATTTCTCAGTGATTTACTCTGTGACTGTCAGAGATGAGTTTTATCAGTGGGCCATCGACAATGACATCTTCAAGCACCGGTCCATCACAGATCCAGCTGAAGCCAGACGCTTCTGTGAGCAGCACGAGTGTCCCGTCGACTGGAAGGACGCCAACGGAGAGAACTGCTGCATCCATCACGCTAACATCCACTCCTGCCCGATGGGGTTCATGaaacaaGCAGAAGAGAGAATCTGTGGGCCCTGGATCCCAGACGACGGACGGATATTCACACACACCATCTCCACTTCAGGAAAAATGACCCAGGCCAACTGGAGCGCCAAGGTGGTGTTGTTTCATGAGGGACTGACGTCTCTGATCGCTCACATTCGTGTGGGAAACATGCAGGTGGCGCTGGAGGCCAAGAGCACCGTCCTTCCTGCTATCAtgTGTGGTGACGGTCTGTGTGAGGAAGAAGAGAGCTGCTCCACGTGTCCGGCCGACTGTGGAGACTGTCCTCTGAGCTCTGCTGCTCGAGCTGCTATCGCCCTCACGgtcaccaccatcatcatcagcTTCATCATCAGCGCTATGTGGTTTAAATATCATAAACAGAAGCTCTTCTGGGACGAGAGCTGGATCATTGACCTCAATCACATTAAACAGGattaTATTGCCCGAGCGACGATGGGCAGCATCATGAGCGTCCCAGCGGCCAACAGCGACTCTAACGCCAGCTGTGTGACGGCTCTGAGCTCCTACACGGGCGTCACCACGTCACGCAAACAACTCTACACACAGACCGGCATCtaTGATGGACGAACCGTTGCAATCaagaaaatcaaaacaaaaaccttttccCTATCGAAGACAATTCGCCAAGAAGTGAAGCAAGTCAGgGAGCTGGATCATCCCAACCTCTGTAAGTTCTTTGGAGGTTGTGTGGAGGTTCCCAACGTCGCTATAATAACAGAGTACTGCCCTAAAGGAAGTCTGAACGACGTTCTGCTCAACGATGAGATTCCCTTAAATTGGGGCTtcagGTTCTCCTTCGCTACAGATATCGCTCGCGGGATGTCGTACCTGCATCAGTTTAAGATCTGCCACGGACGACTGAAATCAGCCAACTGTGTGATCGATGACCGCTGGGTGTGTAAGATCACAGATTACTGTCTGTGGACGTTCCGGCGTGAGGAGTGCGCCGAGCCGCTCACCACCTACCAGCAGAGACTGAAGGAGGTTTACACGCCGCCCGAGGCCCAGAGCGGCGACCAGGAGCCCACGCTGTCTGGAGACGTCTTCAGCTATTCTATCATCTTACTGGAGATCGCCACCCGGAACGACCCAGTGCCGgcggAGGACAGCTCTCTGGAGTGTGGCTGGTGTCCTCCGCTGCCGGAGCTGATCTCAGGGAAAGCTGACAGCACCTGCCCGTGTCCTACTGAATACGCTGAGCTGATTCGCCGATGCCGTGCTCATAACCCCGCCCACCGGCCCACCTTTGAGCAGATCCGCAAGTTTGTTCACAGAATCAACCCACACAAAGTCAGTCCTGTAGACATGATGATGGAGCTGatggaGAAGTACAGTAAACATCTGGAGGTTCTTGTTGGTGAACGGACTCAGGATCTGATGCTGGAGAAACAGAAGACCGACAGACTGCTTTACAgtaTGCTGCCTAAACAGGTGGCTGATGATCTGCGTCAGGGCAAACCTCTACAAGCCCAGAGTTACGTTAGTGCCACCGTGTTCTTCAgTGATATCGTGGGCTTCACACAGCTGTCCAGCACTAGCACTCCTTACCAGGTGGTGGACTTCCTCAACAAACTCTACACCACGTTTGACGAGATCATCGACAACTACGATGTGTATAAAGTGGAAACCATCGGCGACGCATaTATGGTGGTGTCCGGCGTGCCGCGAGAGAACGGGATTCTGCACGCGTCGGAGATCGCCAGCATGGCTCTGGACCTGGTGTCCGTCTGCAAGACCTTCAGAATCCCCCACAGACCACAAACCCAGCTGCAGATCCGCGCTGGAATACACTCAGGGCCGGTCGTCGCAGGGGTCGTGGGAACTAAGATGCCCAGATACTGTCTGTTTGGAGACACGGTGAACACGGCGTCCCGTATGGAGTCCACCAGCGAAGCGCTGAAGATCCAGTGCAGCTCCAGCGTGTTTTACCTGCTGGAGGAGATCGCTGGGTATGTGCTCACCTGCAGAGGAGTCTTACAGGTCAAGGGTAAGGGTGATATGGTGACGTACTGGCTGGAAGGAAAGCGCTCCTCGGCTCCCGTCAAAGACTCCAGGAGACCCGTGATGCTGCCGGAGACGCCCGCCGATGATTACTCCAGTATCCCAGGAGTCCCCAGCGGCTCCGACGGCGCCGACCTGCTccctgacccctgacccctgacccctgtGGAGACACAGGTGTGTGTTTAGCACCGCAGACGGCCTTTAGTGTAGCCGCTGTTTATGTAGGGCGGTGGAATAGACTTACTTTAACCCAAAGTGTATTTTTAGCTGTGTTTGTGACTTCAGAACTACAGAGCCGTAAAAGTACTAGATTACATAGAGTCAtgaattagaaataaaaacaataagtggCATATCGGCATCATTTAAATGCGTCCTTTCAAAGAAATTCACACTCTTATTCATCGAGGCTGCattatattaatcaaaaagacatttataatgttgcaaaagatttctgtttcacacAAACGccgttttttttaactttctattcatctgtgaatcctgaaaagtcaccgtttccacaaaaacactgtgcagcacaactgttttcaacactgatgataatatGCATCAGAAAAACAGCTCATTagtctgatttctgaagatatCGTGAcgccgaagactggagtaatgatgccgaaaatcacagaaataaatcacactttaacacacattcactgaGAAAACAGATGatctacattaaaataatatttagcaatttttatagtatttttgatcaaataaatgcagaagagACTTTCGAAACTAAAATGTGCAACgcaaaaaaagacattcagacacacttaaacacacacacacacacgtaaatgAAAGCGTGGTGAAGGTTACAGAGAGAATTAGAGCTCAGCTGCTGATCTGAATGAGAAGCTCTTCAgaagaacgtgtgtgtgtgtgtgtgtgtgtgtgtttaattaggacGAGCTCCGTCACTCATGTGTCGACTGCAGCTGATGCACGACATCATAAATCATACCACGCATGATGCATGTCCGCGATgcttagaaaataaaatcaacttaATAACCTAAACACGGTGTGTGAAGTTCTTGTTTATAGATCCGTTTAAATCAGCGACGCTGggaaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004383 guanylate cyclase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275076 lncRNA upstream 52632 165516 ~ 167319 (+) True G185363
TU275048 lncRNA upstream 61754 156944 ~ 158197 (+) True G185345
TU275063 lncRNA upstream 81315 137928 ~ 138636 (+) True G185352
TU275033 lncRNA upstream 83693 134637 ~ 136258 (+) True G185333
XR_006248768.1 lncRNA upstream 170163 49034 ~ 49788 (+) True LOC122334578
TU275183 lncRNA downstream 69116 303354 ~ 310514 (+) True G185432
TU275199 lncRNA downstream 150299 384537 ~ 385010 (+) True G185443
TU275210 lncRNA downstream 173222 407460 ~ 409065 (+) True G185446
TU275211 lncRNA downstream 173222 407460 ~ 409065 (+) False G185446
TU275216 lncRNA downstream 179527 413765 ~ 415340 (+) False ctc1
XM_043232562.1 mRNA upstream 25954 186178 ~ 193997 (+) True LOC122334561
XM_043232530.1 mRNA upstream 85599 122174 ~ 134352 (+) True wu:fy63c09
XM_043232526.1 mRNA upstream 117776 94764 ~ 102175 (+) False LOC122334533
XM_043232525.1 mRNA upstream 117776 94766 ~ 102175 (+) True LOC122334533
XM_043232528.1 mRNA upstream 127838 83329 ~ 92113 (+) True ednrab
XM_043232532.1 mRNA downstream 3023 237261 ~ 245179 (+) True toporsb
XM_043232535.1 mRNA downstream 11055 245293 ~ 257813 (+) True ddx58
XM_043232531.1 mRNA downstream 32043 266281 ~ 274870 (+) True LOC122334538
XM_043232552.1 mRNA downstream 44156 278394 ~ 285104 (+) False aimp1b
XM_043232553.1 mRNA downstream 44170 278408 ~ 285104 (+) True aimp1b
unassigned_transcript_2857 other upstream 168117 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 317717 551955 ~ 557861 (+) False plod3
TU275262 other downstream 351281 585519 ~ 586595 (+) True G185478

Expression Profile