RNA id: XM_043232535.1


Basic Information

Item Value
RNA id XM_043232535.1
length 3791
RNA type mRNA
GC content 0.49
exon number 18
gene id ddx58
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 245293 ~ 257813 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGACTTGCGTTATTTCATAAGCTATGATCGCGGCGACTTTCTTAAAGCGGCAGTCCAGTATTTCTCTAGTTTTAGTTCTCTTTAAACTCTTGCGTGTCACAGTGAACTTCTGCGGTATCCTCCTGTAATAGTTTGTGTATTTACCGGGAAAAGGGACTGCTCGGATTTCAGTTTCAGCGAGTATTGCGTTAATAACTGTGTTCACTCGATACGTCTCGATACGTCCTTCGCTCACTAACAAGGAGGCACGTCGGGACACTACAGCGAGCGCTCGGAAGACTCCTACACAGGCAGCAAGCCAGGCTTTAAGACGCCTTCGGTCGGGGAGCGTGTGTTTCGTTTCCTCGCCTGCGCTTTCGGTTTTGTTTCTGGATCAGCTGCTCGAGGCCGGACTGCAGAGATGTACGAGCTGGAGAAGGAGAACCTGCGACGCTTTAGCGATTATATCGCGACGTTTTTACGACCGTCGCTCATCAGGAACTTCATGACGACGTACCTCGATAAAGAGATGGTGGAGAGTATTCTCTCTACAGAGATGACGTCTGTGACCACAGCTGCCCAGATGCTGCTGAACCAGATGTATTGTTTAGAGGAAGTGGGCTGGTTTCAGGCCTTTCTGGACATCCTGCTCGCCTCAGAGTACACCGGACTGCATCAAGCCATTAAAGAGTGGAGCTTCGAGGAGTTAGACAAGCTGAGCGAGCACCGGAGGTTTCTTGAGAAGATCGAGCCCTCGATCACCAAACACATGAAGCCCAGTGAGATGCTGGCCCATATGAACGACTGTCTGAAGCCCAGAGAGTGTGAGGAGATCCAGGCCgaggaGAGTCAGCGCGGTCGTATAGCAGCCAGTGTGAAGCTTGTGACGTCTCTTCTTCGCTCCGACAAACCCAACTGGTTTAAACTGCTGAAGATCGCACTCGGAAACTGTGACTTAGATGAGGCTCTACAACTTCTAGAGACCAATGGAGGAGGTCAGTGTGTGACGGAGGTATGGGACGGAGCACCGGAGGCTATGATGACgactgtgtgttttgagttcagaGAGGAGTCTGAAGACATGCTGATGAGCAGCAACGACACGAGCGCCTCGGAGGAGCCCACCGTCTTCAGAGGGAAATCTGAGCGATCAGGTGAGCGGAAGCTGAGAGAATATCAGAAGGAGCTGACCGCTGCTGCCGCCCAGGGCCAGAACACCATCATCTGTGCTCCCACGGGATGTGGAAAAACCATCGTGGCTTTGGCCATCAGTGAACATCACCTCAAGCAGTTTCCAGACAGAGCAAAGATTGTGTTTTTGGCCACCAAGGTCGACGTCTACGAACAGCAGTACAAGCTTTTCAAGGTTCACTTTTCCAGCAAGGATCCCGACATCAGGGTGACGGGGATGTGCGGTGATATGAATCTGTCTGTGTGCTGGCTGATAGAGAACCACGATATCGTGGTGATGACGGCTCAGATCCTGGTGAACGCGCTGCAGAGCGGCGAGGTGCCTTCCCTCGAGATGCTGTCGCTCATCATATTCGACGAGTGTCACAACACGACCGGAAAACACCCCTACAACAACATCATGAGCCGCTACCTGGACTCCAGACTCTCCGGCGGCACACACTCACTGCCACAGATCGTGGGCCTGACGGCATCGGTCGGCATCGGTTCATTCAAGAGCAGGCTGGAGGCGGAGAACAACATCTTACAGCTCTGTGCCAACCTGGACACCAGGGTCCTCACCACAGTCACCGAACACAAGGACGAGCTCAAGTCATACGTGCACACGCCTGAGAAAGCTTTTTTCGAGGTTCAGCCGTGCACAAGTCACCCCTTCATCAGAATAATCAAAAACATCATGAGTAACATCGAGCAGCTGGCGCTGAAGACCTACAACATCGGTGCGCCTTCctcgctgcacacacacacacacacacacacttacacacactaacacacgtgtttctgtgtgtctctgtcgaACATGTGTCTCAGAAATAGAGCCTCCGTCGAGACATTACAGAACCGAGAGAGGAGAGCGATCTGCAGAGAACTCTACAATTACATCGAACACCTGcggAAATATAACGATGCTCTGATCATTAATGAAGACGCTCGGACTAAAGATGCTCTGGAGTATCTGGACGTGTTCTTCAATCAGGTCCGGAACGCTGGCTTCGACCAGACCGAGAGAAACCTCACCGCGCTCTACGACTGTCAGCGGTCGCAGTTACTGCGTCTGGCCACCGAGGGGGAGCAGAACCCTAAACTAGACGAGCTGAGGTTCATCCTGGAGGAGGAATACCACAGCAACGATCAGACACGCACCGTCATGTTCGTGAAGACTCGAGCCCTCGCCGACGCCATGAAGAAATGGATTGATGAAACCGATTCCCTCAAATTCCTGAAGCCTGGGGTCCTGATAGGAAAAGGACGGAAATCCAACTTTACTGGCACAGGAATGACTCTGAACAATAAGAAAGGGATTCTGGACTCTTTTAAGAGCTCCGATCAGAGTAAGATGCTCATCGCCACATCGGTCGCTGATGAAGGCATCGATATCCCACAGTGCAACTTGGTTCTGATGTATGAGTATGTGGGAAACGTGGTGAAGATGGTGCAAGTTCGAGGTCGTGGTCGGGCGGAGGGCAGCCGGTGTTTCCTGATCTCCAGCAGTAAGGAGCGCATCGAGAAGGAGAGAATAAACATGTTTAAGGAGAAGATGGTGGAGGAGGCCATTATCCAGCTGCAGAGCGACCCCAGCAACCTCAGCAACAAGgtggaCATGCTGCAGAGGGAAGATAAAGCCCGGAGAGATCACATCAGCGCCAGTCCAGAAAAACCCAAAACCCAGGGCAGCTACGAGCTCCTCTGCAGCAAGTGCAAGAAGTTTGCTTGCCTGAGCGACGACATCAGAGTCGTGCTGGGTGCTCATCACATCGTTCTGGATCGTTCCATGTTCAAGCGCTGTATAACTGTTCCTCATAAGAACCCCAAATCCTTCTGTGGCTTCAGTAAGAAAGAGAAGATGCTTTGTGCCGAGTGCAAACACGACTGGGGCCTCATCGCCTCGTACACCACCATCCAGGATCTGCCGCTGCTGAAGATCGAGAGTTTCGTGGTGCAGGATTGCGTCACTCGCAGGCAGGATTACTTCAGGAGGTGGCGTGACGTGACGTTTGCCATCCGTGAGTTTGACATGACTGAGATCACGGCTGAAATGTGCCGGCCGAGAGACTGAGAGCGTACAGTCATACGAGTACAGTTATGAATCTTAAATCGTTCTCACCTGGCTCTAAAGTTCTAAACGCAGGTACTTTTTGGTTTTGTGTAACCGCTGGGCAAACACAACACACGCAGACACTGATTAATCACTATTAGCCttgttattttttgattttttaacTGCAAGTGACGTATCCAATATAACACTTTTAgggatttttatgttttgtattttaacatcGTCGGAGGCACAGGGATATTTGTATCAGtagccaaaaatatattgtgtgggtcaaaatgatcagtttattaagatcatgttctatgaaaatatttttaaatataattaaaacttaGCAATATGCACGGCTCCATTTGAATAACTTTAAAGGAGATCttctcagtttttttatgtttttgctcgctcagattccagattttcaaaaatgtgccccttattaattattaataatgaaatcatttgaTATGAATGTCTCTGATACGTTTGATATCAACTGCTTATCATTGCTTGGTggagaagtgaaataaaatcaaaataaaacttttgaatatttta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K12646 DDX58, RIG-I; ATP-dependent RNA helicase DDX58

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275076 lncRNA upstream 77974 165516 ~ 167319 (+) True G185363
TU275048 lncRNA upstream 87096 156944 ~ 158197 (+) True G185345
TU275063 lncRNA upstream 106657 137928 ~ 138636 (+) True G185352
TU275033 lncRNA upstream 109035 134637 ~ 136258 (+) True G185333
XR_006248768.1 lncRNA upstream 195505 49034 ~ 49788 (+) True LOC122334578
TU275183 lncRNA downstream 45541 303354 ~ 310514 (+) True G185432
TU275199 lncRNA downstream 126724 384537 ~ 385010 (+) True G185443
TU275210 lncRNA downstream 149647 407460 ~ 409065 (+) True G185446
TU275211 lncRNA downstream 149647 407460 ~ 409065 (+) False G185446
TU275216 lncRNA downstream 155952 413765 ~ 415340 (+) False ctc1
XM_043232532.1 mRNA upstream 114 237261 ~ 245179 (+) True toporsb
XM_043232533.1 mRNA upstream 11055 219951 ~ 234238 (+) True LOC122334540
XM_043232534.1 mRNA upstream 11055 219951 ~ 234238 (+) False LOC122334540
XM_043232562.1 mRNA upstream 51296 186178 ~ 193997 (+) True LOC122334561
XM_043232530.1 mRNA upstream 110941 122174 ~ 134352 (+) True wu:fy63c09
XM_043232531.1 mRNA downstream 8468 266281 ~ 274870 (+) True LOC122334538
XM_043232552.1 mRNA downstream 20581 278394 ~ 285104 (+) False aimp1b
XM_043232553.1 mRNA downstream 20595 278408 ~ 285104 (+) True aimp1b
XM_043232551.1 mRNA downstream 29749 287562 ~ 295235 (+) True sgms2b
XM_043232543.1 mRNA downstream 83875 341688 ~ 361157 (+) False LOC122334545
unassigned_transcript_2857 other upstream 193459 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 294142 551955 ~ 557861 (+) False plod3
TU275262 other downstream 327706 585519 ~ 586595 (+) True G185478

Expression Profile