RNA id: XM_043232542.1


Basic Information

Item Value
RNA id XM_043232542.1
length 4480
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC122334545
representative False

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 341688 ~ 362034 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cattttaaacttttgtttagtattttaactagattttaaaagaaagtattCGCGTTAGTTAAAAGTAAAGAGCGGTAAATGTTTTGAGGAATATTTCGCGCTGTTTTCGCTTGTGGTTGTTGTCATGGTGAGGGCGGGGGAGGAAATATGGCGTCAGATTCAAACAGACGCTGAAGGAGTTTTACAATAACAcggatttaaatgtttttaattcattttgcgTCGATATTTCTCCAAACCCCGATGTACGAGCGCCACGGGCATTTAAACGAAGCGTAGCGTCCCATCGGCCTCATGCCCACAGAACCTCCCGCCGCTCGTCCACGCCGGGGCAGCCGGCTCAGGCGTAAAGACCCTGTTTCCACCCCGAGGGCCACACAGAGCGCACAGGAGGAGATCAGCAGGCTCAAGGACGAGCTCGATGGTCTGCGGCGAGACAGGCGGGACGCTGAGGATTTCACGCTCGCTGCTGAGCTGAGGTGGAAAATTAACCAGCTGGAGAACGAGAAGCTGGATTTCACCTCCAAGCACAATGAAGAGGTGGCGCTGTACGAGGCGCAGCTGGCGCGCTTGCGAGCGCAGGTGGAGCGTGGAGAGGCGCAGCGGCAGACGATGGAGTACAACAACGCTGTGGTGAGGAGAGACGCAGCGGCAGAGAGGAGGAACACTGAGGAGAAGATGAACGAGCTGAGGAAAGACAACCACAGACTGGACGtcctCAGCTTGGAGCTGCATCAGAGGGTATCAGATCTACAGAGATCTTTAGAAATAACGCAGCAGGCATGTGAAGACGATCTTAAGGGCCTCCACACGGAGCTGCACGAGAGAGACCGCCTGCTGCTGAGCGCAAACACTGAGAACGACCAGCTGCAGACGGATAAGAGCCAACTACAGACACTGATACAGGAGCAGAACGACACTCTACAGAAGCTAAAATGTGAAATGGAGAGActgaagagagacagagagaaaaacaccgAGAAACTGAGACACAAATCAGCAGATCTGACCCgcagcacagagagagaggagagactgCGCTCTGatctggaggctgCTCTACAGAAGGTGAAGGTTCTGGAGCAGAGTGTGGAGTCGGAGCGTGCCGCACACCTTCAGTCTAaattcagctctgagatcatcCAGatgagGGTGAGGGATCTGGAGGAGGCTCTGGAGGTGGAGAAGAACAGTCACACTGAGGTCTCCTCACGTCTGGAGCTCCTTAAGCAGAAGTGTGGAGAGCTGGAGAGAGCGTACGATCACGAGAGAGACAGGTCACGCGACACAggcctcaaacacacacaGTTGGAGAAGGACTTCTTGACCGTGAAAGCTgatctgattggtcagctggATCAGGAGAAGGCAGCGTCTGCTGAGCTGATTGGACAGTTGGAGCGGGAAAGGGCGGAGTCAGTGAAGCTGTCAGTCAAACTGCAGGAGCAGGAGAAAGTTTGGAGCGAGAGACAGCAGGAAATCAGCCGGgctcTGGTGTGTGTGCAGCAGTCTTATGACGGTCTGGTGAGTGATCTTGATCGTGTGCTGCAGCAGAATCAGCAGAAGAGGGCGACACACACTCATAACACAGaggAAGGAGTTAAACACACAGCGTCTGCTCTAATGGACATCCTGCAGAAAACACTGCACTACTACAACACACAGttgcaggagTCTGTGATTGTGATGCAGAAGTTGAATCTCGAGGTCAGACAGAAGGATGAGACGATCACTGATCTCCAGAAGAACatgcaggagTGTGAGGCTCGTGGCGTGTGCGTCAATGAAGAGGTGAAGCATCTGCGCGAGTGTGTCGCGAACGCCGCCGCTGATCTGCGCAGCctccaaacacaacacacaaacactcaaacaCAGATGAACACACTCCAGCAGCAGCATCACAGCGACtgccagGAGAAGCTGACGTTCCTCCACACACTGTATCAGCGTCTGCTCGACGGATGTGTGCTGGTGACGCCGCCGCACAGCATGCTGGGTAGCTTCTCATGGGCGGAGCTTAGCACCGTGGTGCAGGAGCACGTGGAcaggctgacctctgacctctccgcagccaatcagaaggtgttacacttagagagtgtgtgtgagggcaGATCAGCAGCACTGGAGAGTGTGAGAACGCAGCTGAGACACAGAGAGGAGAGCTGGAGCAAACAGAGAGAAGATctcaacacacaacacacacacctccacgcCCAGCTACAGGACAAGatacagGATGTCAGCAGGCAGCTGCAGCAGGCCAAGGGGCGTGTCCGCTCtcaggaacaggaagtgacacGTCTGCTGTGCGCGAGCAGCGTTCTGGCGGGGTGCGTGCGGGGTCTGCGCagacaggtgtgtgttctgtcgTGGCAGAAGTCCGTGCTGCAGGAGCGCGTCGGCGGCGCAGACGtcctgaggtcagaggtcagcaggCTGCTGCAGGCGCTGGGCGAGGGCATGGTCGAAGGTCGCGGGGCGCGCAGGTTCCGGCGCGGTGTGATCGCGGTGCTGGCCGCCGGCCGTCTGCGGGCGCTGGGACGCAGGTCTGAGGTGATGTTCAGGGTCACGCTGGGCTTCGGTCGCCAGCCGCTCCTGAGCGTGAGAGAGGTCAAGCTccgagaggaagaggaggaggaggaggaggacagggTGACGAAGACGCTCACCTCCTCAGAGCTGCTCAAGCTCATACACACCTGTATGGAGGAACTACAGCAGGAGCTCAGCAGAGgcggTGTGAAGGACTCCTCGTGTGTGTTGTCAGCGGCTCAGAGCGCTTGTAGGAAGCTGCTGGAGCGGCTGCTGTCGGACGTGGACTCTCAGTGTAACGGGCATTATGGGAAGGATTCGTTGTCACGACGACTGGCTGACGGACTTCACACACTCACCAAACACAGCTACTGTAACAGCAagatgatGATGGCGTCTCTTCAGAAGCACATCCTGGAGTTCACGCAGCGTCTGCATTCGGCCGAGGTCGAGCGCAGGAACCTGAGACTGGAGATCTCACGCAGCAAACGCACAAACAgctgcagagacacacacaccgagtgTGTTCCCCTCCAGCGgttcgagtgtgtgtgtgatgagctCAGCAGTGCCCTACAGAGAGAGCAGCGTGCTCAGGCTCTGCTGCACGATCAGGCCTCTCAGCTGCAACAACTGGGCCTCAGCATGGAGCTGCACACGGGGGAAGAGCTGGAGAAGGACCGCACGCTCGCACAGGCTgtacagAGTTTGTCAGACGCCAAGCTGGAGCTGAGGAGGAGGGATCAGTCGCTGCGCTCGCTCCAGAAACagttcagccaatcacagcaggaGAACAAGCAGCTGCAGCACCGCCTCACTGGAGCCGAGAACACACTGACCACCGCAGagatGAATAAAGAGTCTCTGATGAGCTTCATCAAATCTGTGGAGGAGCGGATACGAGAGATGAAAGATCACATCATTCTGTCCAGAAGAGTCTCTTCTCAGGATTATTTCACCCTGCAGCTCTCCAGATTGTCCCTCACACCGTCAGACCTGCAAAGCATCATGGGAAACCCAGAGATAGAAGCGTGTCAGcgtttGTTGATGCGTTTCCTGGAGCTGCATCAGCTGGTGTGCTCTAGAATATCAtctgaggagagagagatgtcATCAAACGAGTCTCAGATCACGGCGCTGAAGAGAAACAGCTGTATACCGTCGCTGGCGTCCTCCGCCCCGTCAGCAGAGGTGGATTATGGGACGTGTTTTCTGACAGACTCCTCCAGAAACAAGCTCTCAGATCTCCAGAGGAAAGtcaaagagagaaaacactgATAAAGTGAGATTCACAGGAGCGCCGTTCATCGCTTCTGCTTTCCTGTGGATGTGTGTCACACCGACTCTGTTATTAAACCTGCGGCGGTTTATTGATGTTTGTTGGTgtttctcactcacacacacacacacacacacacacatagaagaaaacacacacttctGGCCAGAAGTTTAGATTATTATGAAGTCTCTGCtctgatttatttgatcagaaatgcattaaaaattgcgACCTGCTGCTCAAGAACCGTTTGTGGTCTTTATCAGTgaagaaaacagttgtgctgcacaatatttttttttgtgaaaactgatgttttattcgcatttatttgaaacaaaactcTTTTGGAGCAGAAATGTCCCAAATGCCTTTACTGTAAACTTTACAAGCGCTAATGAACTAGTAGAAGTGTAGTTTCtagattctttttttaataatataatacaaaattaaagcattgtttattattataaaaatcagGGCACAGACGTAATGATGGGTTAAGTAAAGTTTAAGAATATTCTAAAGCAAAATCACctaaatgtatactttttaatcattatagtatattgaaatatttatttgctttttttttttttttacattaagcaAAATTATTGAAAGCTACTTGTAAATCTTTTTCTCTCATAAAAGATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275183 lncRNA upstream 31175 303354 ~ 310514 (+) True G185432
TU275150 lncRNA upstream 78590 202042 ~ 263099 (+) True G185407
TU275076 lncRNA upstream 174370 165516 ~ 167319 (+) True G185363
TU275048 lncRNA upstream 183492 156944 ~ 158197 (+) True G185345
TU275063 lncRNA upstream 203053 137928 ~ 138636 (+) True G185352
TU275199 lncRNA downstream 23380 384537 ~ 385010 (+) True G185443
TU275210 lncRNA downstream 46303 407460 ~ 409065 (+) True G185446
TU275211 lncRNA downstream 46303 407460 ~ 409065 (+) False G185446
TU275216 lncRNA downstream 52608 413765 ~ 415340 (+) False ctc1
TU275229 lncRNA downstream 111114 472271 ~ 504022 (+) False G185457
XM_043232551.1 mRNA upstream 46454 287562 ~ 295235 (+) True sgms2b
XM_043232552.1 mRNA upstream 56585 278394 ~ 285104 (+) False aimp1b
XM_043232553.1 mRNA upstream 56585 278408 ~ 285104 (+) True aimp1b
XM_043232531.1 mRNA upstream 66819 266281 ~ 274870 (+) True LOC122334538
XM_043232535.1 mRNA upstream 83876 245293 ~ 257813 (+) True ddx58
XM_043232545.1 mRNA downstream 745 361902 ~ 371295 (+) False LOC122334546
XM_043232544.1 mRNA downstream 751 361908 ~ 371295 (+) True LOC122334546
XM_043232536.1 mRNA downstream 10270 371427 ~ 387407 (+) True si:ch73-168d20.1
XM_043232582.1 mRNA downstream 27037 388194 ~ 406228 (+) True sh3gl2b
XM_043232573.1 mRNA downstream 52588 413745 ~ 427951 (+) True ctc1
unassigned_transcript_2857 other upstream 289855 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 190798 551955 ~ 557861 (+) False plod3
TU275262 other downstream 224362 585519 ~ 586595 (+) True G185478

Expression Profile