RNA id: XM_043232544.1


Basic Information

Item Value
RNA id XM_043232544.1
length 2817
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC122334546
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 361902 ~ 371295 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCGTCGCCGTGACGACACACCGAACAGATTCACCTAAATAACGACCGTTGGTCCACGCACAGATAGCCCCGCCCCCGGACCCACCTGATTGAAACATCGGGAACTTGTGAAAGGGATTCAAGTTTTTAATTATGACAAAGATCATCAGTCAGACTCGTCTCGGTGCGTGTTTGTCCCCCTTTATATCGCCGATGTGCCAAGTTGGATCGCGCACAAAGAGCCGTCTCGATGTGGGACGGCGGAAAGTGGCATCAGAGGGAAGAGGATTGAAaCAAAGGAGCGCTCTCGTCCAATCAGGCGCAGCCGCTCTACTCTTCTCGTTAGGAGTGGGCGGAGTCGGGCGGTCTGCAGAGGCACTGATGGTGATTAGGGCTCTTGATATTGACTCGGGGCCCCAAAGATCCCACCAGAGCTCCGGACTAAACCCTGCAGAGCACATGGGGACgtggacacacacactcctccaggagACGGACCGCGACGAGCTTCTTCTGAAGAGAGATGATCAGACCTCGGCTCTGAAGATGGACAAGGTGGTCAGTTGCACACacgctgagtgtgtgtgtgagtgttttctGCCGGGACAGACTCAGATCAGGTCATGTGATCGCTGCGCTCATGGATGGGTCGTTCacgcggtGGGTAAGGTGTGTGCTCCGGCTCTGCTGTGTTCGGGGCAGGTGGAGATCGTCCAGAGCAGCGTGGTGTTTGACATCAGTAGTCTGATTCTGTACGGGACACAAGCGCTTCCCGTCCGTATGAAGATCCTGCTGGACCGGCTGTTCAgcgtcctcacacacacacaggtgctcaacatcatacacacactcgGCTGGACGCTGCGCGACTACGTCAGAGGATACATGctgcagGACTCCATGGGGAAGGTTCTGGATCGTTGGGTCACCATGAGCCCGGAGGACGAGGCCGTGACTTTGCGTCAGTTTCTGCGTTTTGGGGAAACCAAGTCCATCGTGGAGCTCATGGCCGAGGAGCAGCAGCTCCGGCCAGAAACACACTGCGGCGCTGCGCTAAAGCTGAGAGAAAATAAACCTCCCTCCAGAACGCACCACTTTGAGGATCTGCCGGGAGGAAGCCTAGCGTTCCTGCAGCCGTTCCACTACGTCGGTCCGTCCGTGTTCCCGCCCTCGCCGGCCGCGGACGGTCATCCGGCGACGCAAAAACTGCAGCGGCTCAGCAAACGGAACATCGCAGACGAAACCAGAACCAGACACAAAATAGACGGCGCAGCTAAAAGAGCATCGCTGATGCGAACCTTCGCCAAATGCCCTCGAAACGAAGAGCAGCGGCAAGCCGACCCGATCGCAGACTCTTCTGAAACGAGCGAACGCCGCAGCAGCTCGTGCTCGAGTAAAGCTCGCGTCAGCTGCAGCGCGTGCGCCAAGACCTTTTACGATAAAGGAACGCTGAAGATCCACTTCAACGCGGTGCACTTGAAGATTAAACACCGCTGTACCGTCGACGGCTGCAACATGATGTTCAGCTCGCTGCGGAGCCGCAACCGACACAGCGCTAACCCCAACCCGCGACTGCACGCCGCGCTCGAACACGCCACGCGCAGGTTCATCGCTCAGCCTCGGCGGACGGCCTTGCGTGAAGCTACCTCGCTGGTTTCCGCGACGATCGAGAGCGCTGCGTTGACGGACTGTCGGGTTCCAGGAGGGGGAGGAGCTACAGGCCATCATAGGGCCAATCGGAATGGCCTTGGCGGTGCGAATGATGTGACGCCAAAAAAGAAGTCGCGCAAGTCGAGCACGCCGTTGAAGCTTAATCGGGAAACTCATAGCGAGGAACGCGATCGCTTATCGCCAAGACAACCGGTGGACAGTCTCCATGGCAACCACTCACCTGCGGCCAACGCGCATACGCAGTGCAAATACAAACAATTTTGTAAAACAGCGTATGGTTACCATAGCTACGGCCACGCGGAAGAGATCGGCACGTCTCGACCTCTACTGAAGGTCAAAGAGGAGCCGTGTGATTGCAGAGGTCGTCACCATAGCAACCTGTGACCTCGACAACGTGACATCAGAACCGACTCCACGCTGGAAAGTATCACACTGAATGTGAATTTGTGAAagtagaaaaactaaaaaaaaaaattgtaaaaataatctttGTAAAAATTGGCATTTTGTTTGTTTCGGCTTGTTGTGTAGCTTATGTTAATAAGGTCCATTGTTCCTCCGTGCatgatgttgttgttattatgaaaataataattcatttgttaACTTGAGGTGGAATAAAATGCAGTCATCAGCATATTCATAAGGCGTCGATCAATCATGCCATGTCCTTGTTTTTATAATCACCAGTAAGGTTTTTACCGTGATTACATAATCATACAGTAATATGAACCTGAGGTTGTTATGGCAACCAGCAACAACACGCATATTTTGCCACGCTAaacttatattattatacacatataacaAACAGTGAATAAACATGTTTGACAACACGATCACAAATGAGGATTTATTAAGCAAGTCAAACTGAATCTAATGTATGTTCTCAACAACATGTAGCACCCAAACTCCTGTTCATGAAAacctgatttttaaatattattattacgcTGTCTATTTGTTCcaagtattattaattataaattcgGTGATGTAACGTTAATAAACGTTGTCTCCTGTAGATCAACAGGTATTTAATCAGTAGTAAAGTAGCTTTTAGTGTAACTGCCTGCTCCAGGTCTGCAGCCTCGGCTCTTTTATTgcagaataaaatgttataatacataaaatcttGACGTGATTCTCGCGATGCGACGCACACG

Function

GO:

id name namespace
GO:0048066 developmental pigmentation biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K24146 BNC; zinc finger protein basonuclin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275183 lncRNA upstream 51394 303354 ~ 310514 (+) True G185432
TU275150 lncRNA upstream 98809 202042 ~ 263099 (+) True G185407
TU275076 lncRNA upstream 194589 165516 ~ 167319 (+) True G185363
TU275048 lncRNA upstream 203711 156944 ~ 158197 (+) True G185345
TU275063 lncRNA upstream 223272 137928 ~ 138636 (+) True G185352
TU275199 lncRNA downstream 13242 384537 ~ 385010 (+) True G185443
TU275210 lncRNA downstream 36165 407460 ~ 409065 (+) True G185446
TU275211 lncRNA downstream 36165 407460 ~ 409065 (+) False G185446
TU275216 lncRNA downstream 42470 413765 ~ 415340 (+) False ctc1
TU275229 lncRNA downstream 100976 472271 ~ 504022 (+) False G185457
XM_043232543.1 mRNA upstream 751 341688 ~ 361157 (+) False LOC122334545
XM_043232539.1 mRNA upstream 751 341689 ~ 361157 (+) True LOC122334545
XM_043232542.1 mRNA upstream 751 341689 ~ 361157 (+) False LOC122334545
XM_043232541.1 mRNA upstream 751 341992 ~ 361157 (+) False LOC122334545
XM_043232551.1 mRNA upstream 66673 287562 ~ 295235 (+) True sgms2b
XM_043232536.1 mRNA downstream 132 371427 ~ 387407 (+) True si:ch73-168d20.1
XM_043232582.1 mRNA downstream 16899 388194 ~ 406228 (+) True sh3gl2b
XM_043232573.1 mRNA downstream 42450 413745 ~ 427951 (+) True ctc1
XM_043232572.1 mRNA downstream 59822 431117 ~ 434925 (+) True LOC122334569
XM_043232579.1 mRNA downstream 79992 451287 ~ 464199 (+) False tfr2
unassigned_transcript_2857 other upstream 310074 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 180660 551955 ~ 557861 (+) False plod3
TU275262 other downstream 214224 585519 ~ 586595 (+) True G185478

Expression Profile