RNA id: XM_043232552.1


Basic Information

Item Value
RNA id XM_043232552.1
length 1108
RNA type mRNA
GC content 0.57
exon number 7
gene id aimp1b
representative False

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 278394 ~ 285104 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAATATGATCCTACACATGTGCCCATGTGCCTCGACATTTTACATCAGGAATGCTGACAGaccgaaacacacacacacacacacacacacttcagtgcTTTCCTTCTGGTCCGGAGCGCCGCtgaaacacagaacacacactctCGCGGAACAGGTGCAGATGTCTGCAAACAGACCTCATGGATCCAGATCAGATCCTCAGGATCAGGAGATGATGCAGTATTTCACACAGCAGGTCCTGTTCTTCAAGGAGAAAGCCAtGCTGCAGGCCTCTGTGAGGGAAGAGAAGAAACTGCTGGTAGAAAATGCCAAACTGAAGAAAGACATCGATGACCTGAAGAAGCTCCTGCAGGACACACAGAAGAGGAAAGCAGTAAAGCTGCATCAGGAGAGAGCTCTGACGGCTGTGATCGCGTCCAAGTCGGCTCTGCTGGGAGAAACGGCTCCTCCGTCTCAGACGAGCACCGCTCACGCTCGACCTGACGCCAGAcgcaggagagagagagcaggtctgaGCGCTTCGGAGTCGGCGTGCGCTCTCATGAGAGATCAGAAACCTGACGTGACCCGTCTGGACCTGCGGGTCGCTCGGGTCCTGGACGTCCGCAAGCACCCGGAATCAGCGTCACTGAGCGTCCAGGAGGTGGAGCTGGGAGAACCCGCCCCCAGAACCGTGGTCAGCGAGCTGACCAATCACTCGCTTCCAGAGCAGcTGGTGGGCTGTCTGGTGGTGGTCTTGTGTAATGTGCGTCCAGTGAAGGTCCGAGGCGTTCAGTCGCAGGCCCGCCTCCTCTGCGCTGTCAGTCAAGAGAGAATGGAGCCCTTGACTCCGCCCACGGCCGCTCAGCCTGGAGACAGAGTCACTTTCCAGAGTTACCCCGGTGAACCCGAGAGAGAGCTGAACCCCAAACAGAGGATCTGGGAGCGATTACAGCCCGACCTGAGCACAGACGCCAAGGGCGTGGCCAAGTACAAGGGCGTGGCCTTCGAGGTCCGCGGGAAGGGCCTCTGCCGGGCCCCGAGCATCAGCAACGGAGCCATCAGATAACACGCGCGCTTCAGCGACGAGAGACTCCGCCATCtcacaaataaatcattgaaaaaCTA

Function

GO:

id name namespace
GO:0000049 tRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275150 lncRNA upstream 15295 202042 ~ 263099 (+) True G185407
TU275076 lncRNA upstream 111075 165516 ~ 167319 (+) True G185363
TU275048 lncRNA upstream 120197 156944 ~ 158197 (+) True G185345
TU275063 lncRNA upstream 139758 137928 ~ 138636 (+) True G185352
TU275033 lncRNA upstream 142136 134637 ~ 136258 (+) True G185333
TU275183 lncRNA downstream 18250 303354 ~ 310514 (+) True G185432
TU275199 lncRNA downstream 99433 384537 ~ 385010 (+) True G185443
TU275210 lncRNA downstream 122356 407460 ~ 409065 (+) True G185446
TU275211 lncRNA downstream 122356 407460 ~ 409065 (+) False G185446
TU275216 lncRNA downstream 128661 413765 ~ 415340 (+) False ctc1
XM_043232531.1 mRNA upstream 3524 266281 ~ 274870 (+) True LOC122334538
XM_043232535.1 mRNA upstream 20581 245293 ~ 257813 (+) True ddx58
XM_043232532.1 mRNA upstream 33215 237261 ~ 245179 (+) True toporsb
XM_043232533.1 mRNA upstream 44156 219951 ~ 234238 (+) True LOC122334540
XM_043232534.1 mRNA upstream 44156 219951 ~ 234238 (+) False LOC122334540
XM_043232551.1 mRNA downstream 2458 287562 ~ 295235 (+) True sgms2b
XM_043232543.1 mRNA downstream 56584 341688 ~ 361157 (+) False LOC122334545
XM_043232540.1 mRNA downstream 56585 341689 ~ 362034 (+) False LOC122334545
XM_043232539.1 mRNA downstream 56585 341689 ~ 361157 (+) True LOC122334545
XM_043232542.1 mRNA downstream 56585 341689 ~ 361157 (+) False LOC122334545
unassigned_transcript_2857 other upstream 226560 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 266851 551955 ~ 557861 (+) False plod3
TU275262 other downstream 300415 585519 ~ 586595 (+) True G185478

Expression Profile