RNA id: XM_043232562.1


Basic Information

Item Value
RNA id XM_043232562.1
length 2421
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC122334561
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 186178 ~ 193997 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgctgATGAGTGTCTCTCTCAGATCCGAGGTCAAACGCTGCTGTAAACATTGAGTTGTTTTCTCTGAGCTCTTACCTTGGAGCTGAAGGTCAAACCCCACAGACACTTCGATGCAGAGCACTTTCTATCCTTTGTTTGGATCAATTACCAAATCTTGTTTTTTCCAAAACATTCCTTCAATATTCTTCAGACCTTTCTTTCACTCTGGTTTAcagtgttttactgtatttactcattcagaaaaaacaatgttatttaatacagtgctctttttactaatttaatacaaaaccatgacaaagttttttttgttatataattaaaagcaatatCACTATCTGTATCATGTCTTCGCTTCACATCTTCtcatttaatcacaattaactgTGCAGTTTTGCTTTAacctttcaataaaaaaaacaataatttggtCTTCTGCacaaaatgacaattcataCTGAATTTAATACAGATTTAATTAAACCATTCGTCataatcaaaattaaagattttatttaaaccgAACTAAATGAAGCCGATGCGTTGTGTCTTCTTTAttctgtttcagttctgttAAAAGCAATGCATCTGGACTAGTTCATGAACACGGTTTTAATTTTGACggctgtttttaaaaagcgGCTTCCTCGAGACCAGGATCTTGATTCTTGATTCTTCGTTCATATTCACCGGCGCACTAGAGGCGGGGCTTCGCTCTCAGCCGTCAGCGCCGCTCTGTCATTGGTGCTTCCCGTGACCTCCAAGGCCGACCCAAGGCTGCTCGGGGCCCCTATAAGAGCCCGAGAGCTGCGTGCGCGGGCACCGGAGGCCGTCATGtgctgggtgtgtgtgtgctgctgctcggcggcgctgctgctgctgctgctcagGTGCATGCTGGGACGGCGCTCGTCGGTGCCGTGTCTGCCGCGGCTGCCGGTGCTGGGCAGTCTGCTGCACCTGCGCTCGTCTCTGCCTCCTCACCTGCTCCTCACGCGGCTCTCCCGCAGCTACGGCCCTCTGTTCGGCCTGTTCTCCGGGCCCCACTTCACCCTGGTGGTCAGCGAGGTCGGGCTGGTCAGGGAAGCGCTGCTGCAGCGCGGCCGGGAGTTCGCCGGGCGGCCCAAGATGgtgaCCACGGACCTGCTGACTCAGGGAGGGAAGGACATCGCGTTCTCAGACTACAGTCCTCTCTGGAGGAAGCACCGGCGTCTGGTGCACGACTCCTTCACGCTGTTCGGAGAGGGGTCCAGCAAACTACAGAGCATCGttCAGGAGGCTGCAGAGGATCTGTGCGAGGAGCTCCAGTCCAGCAGGGGTCAGAGTTCAGATCTCAGCCCGGTTCTGATGCGGGCCGTCACTAACGTCATCTGCAGGCTGGTGTTCAGCTCCTCGTACCGGCGCCACGACCCCGAGCTCCTGACCGTCATGGACTACAACGACGGCATCGTCCAGACCATCGCCCGAGGAGGACTCGTCGACATCTTCCCCTGGCTCCGGGTTTTCCCCAACAAGGACCTGAAGAAGCTGAAGCAGTGTGTTTCAGTGAGAGACCAGCTCCTGCGCAGGAAACTGCTGGAGCACAAGATGACCCTGACGCCCGGAGAGCCGCGAGACCTGCTGGACgctcttctgattggtcagatgaaGGGGTCAGGGGAGGACAACGACATCACGGAGGATCATGTGCTGATGACGGCGGCCGAGGCGTTTGGAGGAGTAGAGACCACCTCCACCACACTGCTGTGGACCATAGCCTTCCTGCTGCACCAcccacaggttcaGGAGCGTGTTCACTCGGAGCTGGATGAGTGTGTGGGTCAGTCTCGCGCTCCGTCTTTGAGCGATCGTTCCCGTCTGCCGTTCCTGGACGCTGTTCTCTGTGAGGTGATGCGCATCCGTCCCGTCAGCCCCATCCTCATCCCGCACGTTGCTATGCGGGACACCAGTTTGGGGGGTCACTCTGTTCCTAAAGGAACGCGTGTTCTGGTGAACATGTGGGCGATTCACCACGACCCCAAACACTGGGACGAGCCCGACCTCTTCAGACCCGAGCGCTTCCTGGACTCGTCTGGGAGGAGAGTGACCCCGGGAAGCTTCCTGCCGTTCGGAGCCGGTCCGAgggtgtgtgtgggagagtCTCTGGCCAGAACCGAGCTCTTCCTGTTCGCCAGCCGCCTCCTGCAGCGCTTCAGCTTCACAGTCCCTCCTGGAGCTGCTCCACCAGAACTACAGGGAAGACTGGGAGTAGTCCTCCAGCCCCAGAGCTACAGAGTCACAGTCACACCAcgacactgacacacacacacacacacacacacacacacacacacacacacacacacacacgacactgac

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K09754 CYP98A, C3'H; 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275076 lncRNA upstream 18859 165516 ~ 167319 (+) True G185363
TU275048 lncRNA upstream 27981 156944 ~ 158197 (+) True G185345
TU275063 lncRNA upstream 47542 137928 ~ 138636 (+) True G185352
TU275033 lncRNA upstream 49920 134637 ~ 136258 (+) True G185333
XR_006248768.1 lncRNA upstream 136390 49034 ~ 49788 (+) True LOC122334578
TU275150 lncRNA downstream 8045 202042 ~ 263099 (+) True G185407
TU275183 lncRNA downstream 109357 303354 ~ 310514 (+) True G185432
TU275199 lncRNA downstream 190540 384537 ~ 385010 (+) True G185443
TU275210 lncRNA downstream 213463 407460 ~ 409065 (+) True G185446
TU275211 lncRNA downstream 213463 407460 ~ 409065 (+) False G185446
XM_043232530.1 mRNA upstream 51826 122174 ~ 134352 (+) True wu:fy63c09
XM_043232526.1 mRNA upstream 84003 94764 ~ 102175 (+) False LOC122334533
XM_043232525.1 mRNA upstream 84003 94766 ~ 102175 (+) True LOC122334533
XM_043232528.1 mRNA upstream 94065 83329 ~ 92113 (+) True ednrab
XM_043232533.1 mRNA downstream 25954 219951 ~ 234238 (+) True LOC122334540
XM_043232534.1 mRNA downstream 25954 219951 ~ 234238 (+) False LOC122334540
XM_043232532.1 mRNA downstream 43264 237261 ~ 245179 (+) True toporsb
XM_043232535.1 mRNA downstream 51296 245293 ~ 257813 (+) True ddx58
XM_043232531.1 mRNA downstream 72284 266281 ~ 274870 (+) True LOC122334538
unassigned_transcript_2857 other upstream 134344 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 357958 551955 ~ 557861 (+) False plod3
TU275262 other downstream 391522 585519 ~ 586595 (+) True G185478

Expression Profile