RNA id: XM_043232571.1


Basic Information

Item Value
RNA id XM_043232571.1
length 3177
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC122334567
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 534160 ~ 542013 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacacacacacacacacacacacacacacacacgctcgagTACTTTAACATTACATCTGCAgtttgcatcattttttaaGCGTTGATTGTTGTCGAAGTCGACTTTTGCAGCAGTTGATTCTGATATTAATATAAGAGCTCTGTTTTGATCATTCACTGTACAGTTATTAATCTATAACCGAGAGGGTTTGACAGCGGCGTCTGGTTCATCAAGCAGTCTGACTCAAAGTTTGAGCTCTCCAGATCTTCATGTTGGTGTTCGAGCATCCATTTGCGGAGGGCGTGGCTTTAAGAAACCCTGATGATGTCATGCAGTCAGCCAGTGCTGCTGTCGATCATCTTCTGGCCCCGCCCACATCTCTTACTATAAGCAGTTTTGAGAAGGAGGGCGGGGCGGTTGCAAGCCCTTCCTTATTATGTGACCACGCCCCTCAAAGCGCTCCGCCTCTGGCTCCTCCCCTTCCTCCGCCCTTTCCCGTGAGAAACCCTgcggagaggaagaggagggtgaGGAGCTTCTACTGGAAGCCGATTCCTGAAGACCGTGTCAAGCAGCAGCGGACCGAACCTGTGGAGCAGCAGGGATCCGTTCCACATCGACATCCGAGCCATCGAAGAGCTGTTTGGACACGAGGACACGCCCTCCTTCAGCGCAAGCGGTGTGATTGGACGAGAAGACACGCCCCTGTGAGACGCCTCAGACTGCAGATCCTGGACTCCAAGAGAAGCCTGAATATCTCTATTTTTCTGaaacactttaaaaaGTCCTGTGAGAGTCTTCTGGATGATGTTCTTCATGGAAACACAGGTGTCTTCAGCGTGGAGTCTCTCAGAGAGCTGCTGAAGCTCCTGCCGGAGGAGGACGAGGTGAAGAATCTTCAGATGTTCAGTGGGAATCCTGAAGACCTGGCGCCGCCTGATGCCTTCATACACAAGCTCATCCATTTGCCCAGGTATGAGGTCCGTCTCGAGGCTCTGCTGTTAAAGGAGGAGTTTTTCCCTTCATACACTGCTATGAAACACGACATGAGCGTCATCCTCAGCGCCATTAAAGAGCTGATGAGCTGTGAGGAGCTTCACAATGTCCTTCATTTAGTTCTGCAGGCGGGAAACATCATGAACGCTggTGGATCTGCTGGTATTGCCGTGGGCTTTAAACTCTCATCTCTCCTGTTACTGGCCGACACTAAAGCCAACAAACCTGGAGTCAGCCTGCTGCACTTTGTCGCTCAGGAGGCTCAGAAGAAAGATCTGCTCATGTTTCCAGAGGAACTTCAGCGTGTTCATCAAGCGGCGCGagtgtgtgttgACAGCATCCATGAAGAGTTTAACACCCTGACCAGAAGAGTTGATCAGTTACAGCAGAACGTCCAAACAGATGATGAGCTCCTGACGCAGCTGCAGTCCTTCCTAgagAGTGCTGGAGGAGCTCTGGAGGATTTGAAGGTCAGTATTGACGAGGTTCAGAAGGAAGGAGACGCTCTGATCGATTTCTTCTGCGAGGACCGAGACGTCTTCAGACTGGACGAGTGCTTCCGAATTTTCCAGACTTTCTGCTCCAGATTCAAAAAAGCAGTTCAGGAGAACGCGGAGCGAGGAATGTGGGAGGAGTCTCGGCGCAGTCGTCTGAAGGAGTCAGAGGACAAGCGCCACTCGTGGGCGGGGCATGAAGATGGGGGCGGGGCCTCCAGCTTGCAGTCCAATAGCCAAGCTGATGTGGCGGCAGCATTAAAGAGGGAGGGGTTTCTGCAGCTGCTCAAGACAAGCTGTCACAGTCCTCGTCACTCACCCCAACACGAGagcgtgacctttgacccctgtGGATCGGATACACTCGTACTTCCTCCGATACAGTCGCTCTCCATCACAAACACGACAGAGGAGCCGGAGATCCAAAATAAGAGTCTTTCCACACAGGAAGCGCAGAACAACGACCTTCAAACACAAAGCCAGGAAACATCTTCAAGCGTGAACTCTGACGCTTCACAGGTCATTCTAGTATCAAAACCAGAGGTTATTCATGAAACCATGTCTACAAAAGAGCCAATCAAAACCAGCGCTGGAGtgaaacagccaatcagcaaaCGAACCTTAAGCTCTAAAAACAGAGCAACTCTTTCTGCGAAATCACCTTCACCTTCCACTAAAgcaccatcatcaccatcatcatcatcatcatccccTAAATGTGTGTCCTCCTCTGAAACGGCGAGTTTGAGGAAGCTCGTTCCTCTCCGGCAGGACCACAGTTCTTCAGTCCTCAGCCGCGCAAAGAAGACGCAAGCGTTTCGTCCGGAGGAGAAGATGTGTCGCGTTACCCTCGATCGTCCCAGTCCTCAAACCTCGGTCAAACCGCTCAGCTTCGCCCGCAACACCGTGGCCTCAACGAGTCGCCGCACCAGTGCTCCGGGACAGCAGGCTAAAGCAGCTCCGCTCGGTCTCTCTCAGGTCCCTAAACCTCCTGCAGGAACGGTCCGGCCGCCGAGGAAGAGCAGCGCCGCCACTGAAAGCTCAGCGCTTGCTCGAGGGTCACGTGATAAAGGTGTTCAGCCCACGTGGAGGTAGAGAGACGTTATGCTAgcactgttcaaaggtttgggctTTTTaaaccaagactgcatttaccTGATCAGAAACACTCGTTTGGTAAtatctgtaatttattactcttcagtgtcacatgatccttcagacatcattctaatatattgATGCgtcgctcaagaaacatttctgattactaTCAATAACAGTCATATTTtagtggaaactgtgatgcatacattttttttttaatattcacagaTAAATTGAAACAGCGTtgatttgaaacagaaatcttttgtaacattataaacgtcTTACTGTCAGTTTTAAAGATCAATTTAATGATCCTcgatgaataaatgtattcattcaatCTCACCGACGTCACACTTCTGAACAGTAGCTTTAATTAagaatcttttttattataatttatatattttattatttttaattaattgtgtaatttatgCTCTTATTTATCTTATTAAGATTGTACATTGCCCATaaacttaattaattaaaaaggaaagtaTAGATGATTTATACATACAGCTTCATACTTGTTTGAagcaaataaatgttcattaataAACTTGCCAAtgattagctttttt

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04640 Hematopoietic cell lineage

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275232 lncRNA upstream 3139 472271 ~ 531021 (+) True G185457
TU275231 lncRNA upstream 3139 494068 ~ 531021 (+) False G185457
TU275229 lncRNA upstream 30138 472271 ~ 504022 (+) False G185457
TU275216 lncRNA upstream 118820 413765 ~ 415340 (+) False ctc1
TU275210 lncRNA upstream 125095 407460 ~ 409065 (+) True G185446
XR_006248767.1 lncRNA downstream 316 542329 ~ 545868 (+) True LOC122334568
XR_006248763.1 lncRNA downstream 40039 582052 ~ 583560 (+) False LOC122334532
TU275258 lncRNA downstream 40061 582074 ~ 584568 (+) True LOC122334532
TU275259 lncRNA downstream 40061 582074 ~ 584568 (+) False LOC122334532
TU275260 lncRNA downstream 40061 582074 ~ 593003 (+) False LOC122334532
XM_043232578.1 mRNA upstream 69959 452926 ~ 464201 (+) False tfr2
XM_043232577.1 mRNA upstream 69959 452929 ~ 464201 (+) True tfr2
XM_043232576.1 mRNA upstream 69960 452931 ~ 464200 (+) False tfr2
XM_043232579.1 mRNA upstream 69961 451287 ~ 464199 (+) False tfr2
XM_043232572.1 mRNA upstream 99235 431117 ~ 434925 (+) True LOC122334569
XM_043232523.1 mRNA downstream 6672 548685 ~ 560341 (+) True plod3
unassigned_transcript_2857 other upstream 482326 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 9942 551955 ~ 557861 (+) False plod3
TU275262 other downstream 43506 585519 ~ 586595 (+) True G185478

Expression Profile