RNA id: XM_043232578.1


Basic Information

Item Value
RNA id XM_043232578.1
length 2983
RNA type mRNA
GC content 0.55
exon number 17
gene id tfr2
representative False

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 451287 ~ 464201 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGAGACAGAATACACACCTGACCGCCACTGTGTGAAGTGCTGCTTTTTGCTTATTACAGCTAGCAGTAGAAGTCTATGtctctaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacaggaTACAAAGTAGATGATGGATTGTGTTGCAGGATTGATTTCTGGGTTGTGTGTGAGCAGGCAGCGGGGGGCGGAGCTCAGGGGAATGAAGGTGTGGACGAAGGGGGTGGAGTCCGGCGGCGTGCCCCGCCCACTGAGCTGAAGCTGGTCCCGCTGGAggaggggtcagaggtcagcagTGACATCACCAGCGCACTGATGCTGCAGAGGCAAAGGAACCGAAGGAAGACGGCCTTCTACCTGACCCTGAGCGGCCTGCTGATCTTCACCACGGCGTTCCTGCTGGGATACGTGGCGTTTCGTGGGATGTGTGTTGTGTGCGGGAACGAGGGCGATCTGATTCCTCTGAGCGACGCGGCCGGAGCTCAACACTCGCCCGAGGGAGGCATCATGTACATGGCTGAACTCAGAGAGATGCTGAAGAAATACCTGAAGGAGGAGAGGATCGAGAACACGCtcagGCGTGTGAGTCGGGCGTCTCATCCTCCGGGGTCCTCGGAAGGAAATGTGGTGGCCAGAGAAATCCTGCAGAACCTGCAGAACCTGGGCATGGATCACACCTGGACCGACTCGCACTACGCCACGCTTCAGTTCCCCTCTAGGACGCGGCGTAACACGCTCTGGTTGGTGGATTCTGAGGGGGCGGAGCTGGAGGAGATTCCTTTGGACAGCGAGGGATACTGTGCCTACAGCGCCACGGGAACCGCCACGGGCGGCGTGGTGTACGTGAACTACGGCCGGCGCGAGGACTTCGATCAGCTGCGCGCGATGGGCGTCACCCTCAACGGGTCCATCGCCGTGGCGAGGGTGGGAGGAGCCGCGAGCTTCGCCGAGAAGGTGTGGCACGCGCAGGAGGCGGGGCTTGTGGGAGTGCTCATCTACCCTGATCCCGCCGACGTCCCCCAGGATCCACGACGACTCGGTCTCCACAGCAACGCCGTCATCTCTGAACACGTGCACCTGGGCTCCGGCGACCCCTTCACACCTGGCTTTCCCTCGTTTAACCACACCCAGTTCCCTTCCACCCAATCCTCAGGCCTGCCAATCATTCTGGCTCAGCCAATCAGTGCCAACGTGGCCTCCAAGCTGCTGAGtcagTTGACCGGCTCTGATTGTCCACGAGGCTGGCAGGGCCGTTTACCGTACGTTCAGTGTGTTCTGGGGCCGGGCTTCACAGGGCCGGATGAGCGCAGGGTGAAGATGGCCGTGTATAACACCATGAAGCCGGTGCTGCTCAACAACATCTTCGCCTCCATCGAGGGCAAAGTCGAACCCGATCACTATATCATCATCGGGGCCCAGAGGGACTCGTGGGGCCCCGGAGCCGTCAAGTCTGGAGTGGGAACGGCGCTCCTGATGGAGCTGGCCAGAACCTTCAGCAACATGGTGGAAAGCGGCTTTTACCCAAGACGCAGTTTGCTTTTCGTCAGCTGGGATGGAGGGGATTTTGGGAATGTTGGTGCCACCGAGTGGCTGGAGGGTTATCTGACCATGTTACACCTGAAAGCTGTGGCGTATTTTAGTCTGGATCAGGCCATCCTGGGTGATGATATCCTCTCGGTCCACACCACTCCTCTGCTCGCCGATCTCATCGAAGGAGCCCTCAAAcaaGTGGAGCATCCCAAACACACGGGTCAGTCCATTCTGTCTCTGGTGCGGCGGCAGGGCGGCTGGAGGAACataGTGAAGCCGTTGTATCTGAACAGCGGAGCTTACAGCTTCACCGCCTTCGGAGGAGTTCCTGCCATGCAGCTGCATTTCACTGAACAGGCTCGCTCGTACCCGTTCGTCAACACTCAGCTGGACAGCATGGGTCATCTGCAGGAGCTGCTTCAGGGTCGTCTGGGGTCAGTGGGTCGAGCCATAGCTGAGCTGGTGGGTCTGATGGTCCTCAAACTGTCCCATGACCACATCCTACCCCTGGACGTCACCTGCTACAGCAACACAGCCCAGCAGCTGAGCTCCAAACTCAACCAGTACACCGCACAGCTACAGTGGGTATTCAGCGCTCGAGGTGATTACAGCAGAGCTGCCAAAAACTTGCACGAGGCCATAAAGAACAGCGACATTCAGGACGAGAGACTCTCCAGACTCTACAACACACGCATCATGAGGGTGGAGTACTACTTCCTGTCGCAGTACGTGTCGGTGGTGGAGACGCCGTTCCGTCACGTGTTTCACGGCCGCGGCGACCACACTCTGAGCGCTCTGGCCGATCACCTGTCGCTGCTGCACTCCGCCCCGCACCTGTTCGACGAGGCTCGTTTCCGTCGCCAGCTGGCGCTCTTCACCTGGACGCTTCAGGGCGCCGCGAACGCGCTCAGCGGAGACGTCTGGAACATCGATAACCCGCTCTAGAGCTACACACGCGGCCTTCAGCGTCTATTTATCCAGCAACAACCTCGAATGCCATTACATGCAGTGCTTTTACACACAGTCAAACCCAAGTTTATTCAGACACCTATGACACTTCTCACATTATCACAGTAGTTTAGAAAATGCAATCGGAACAAAGTCATCTCGATAATGCTAGAACTTTGGTAAAGTTGATGCTTTGAATCTTACAATACACGATGCTCAAATCATTACACCccaagaaaatgtatatatttttattacttcataTAGTTGAAGACTACATCAGTGTTTTGCATCTAAGAGCAACATGATGGTctttcattcctgaatgaatcagcagtttaaatgattcggttcaatCACAGTGACTCACTCATTGACagtgacttactgccacctactggcgatTTTTATTTACcctattaaatattgtatttttctattatatttaaaaattagataattaaatgtaataatttgtcTCAAAATATAACttgtag

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275216 lncRNA upstream 37586 413765 ~ 415340 (+) False ctc1
TU275210 lncRNA upstream 43861 407460 ~ 409065 (+) True G185446
TU275211 lncRNA upstream 43861 407460 ~ 409065 (+) False G185446
TU275199 lncRNA upstream 67916 384537 ~ 385010 (+) True G185443
TU275183 lncRNA upstream 142412 303354 ~ 310514 (+) True G185432
TU275229 lncRNA downstream 8070 472271 ~ 504022 (+) False G185457
TU275232 lncRNA downstream 8070 472271 ~ 531021 (+) True G185457
TU275231 lncRNA downstream 29867 494068 ~ 531021 (+) False G185457
TU275142 lncRNA downstream 74154 538355 ~ 590185 (+) False plod3
TU275144 lncRNA downstream 77428 541629 ~ 544613 (+) True G185405
XM_043232572.1 mRNA upstream 18001 431117 ~ 434925 (+) True LOC122334569
XM_043232573.1 mRNA upstream 24975 413745 ~ 427951 (+) True ctc1
XM_043232582.1 mRNA upstream 46698 388194 ~ 406228 (+) True sh3gl2b
XM_043232536.1 mRNA upstream 65519 371427 ~ 387407 (+) True si:ch73-168d20.1
XM_043232544.1 mRNA upstream 81631 361908 ~ 371295 (+) True LOC122334546
XM_043232571.1 mRNA downstream 69959 534160 ~ 542013 (+) True LOC122334567
XM_043232523.1 mRNA downstream 84484 548685 ~ 560341 (+) True plod3
unassigned_transcript_2857 other upstream 401092 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 87754 551955 ~ 557861 (+) False plod3
TU275262 other downstream 121318 585519 ~ 586595 (+) True G185478

Expression Profile