RNA id: XR_006248767.1


Basic Information

Item Value
RNA id XR_006248767.1
length 176
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id LOC122334568
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 542329 ~ 545868 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCCGAGAGCAGTGGTCATCGTTATAGCGTCCGTCGTGATGAAAGTGAGCGCAGTCTTCTCCGCCTCCCAAACCATGATGCTTCCAGTCATCCGGCTGACCGGGCATCCattcactgcacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275232 lncRNA upstream 11308 472271 ~ 531021 (+) True G185457
TU275231 lncRNA upstream 11308 494068 ~ 531021 (+) False G185457
TU275229 lncRNA upstream 38307 472271 ~ 504022 (+) False G185457
TU275216 lncRNA upstream 126989 413765 ~ 415340 (+) False ctc1
TU275211 lncRNA upstream 133264 407460 ~ 409065 (+) False G185446
XR_006248763.1 lncRNA downstream 36184 582052 ~ 583560 (+) False LOC122334532
TU275258 lncRNA downstream 36206 582074 ~ 584568 (+) True LOC122334532
TU275259 lncRNA downstream 36206 582074 ~ 584568 (+) False LOC122334532
TU275260 lncRNA downstream 36206 582074 ~ 593003 (+) False LOC122334532
TU275137 lncRNA downstream 44447 590315 ~ 600124 (+) True G185402
XM_043232571.1 mRNA upstream 316 534160 ~ 542013 (+) True LOC122334567
XM_043232578.1 mRNA upstream 78128 452926 ~ 464201 (+) False tfr2
XM_043232577.1 mRNA upstream 78128 452929 ~ 464201 (+) True tfr2
XM_043232576.1 mRNA upstream 78129 452931 ~ 464200 (+) False tfr2
XM_043232579.1 mRNA upstream 78130 451287 ~ 464199 (+) False tfr2
XM_043232523.1 mRNA downstream 2817 548685 ~ 560341 (+) True plod3
unassigned_transcript_2857 other upstream 490495 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 6087 551955 ~ 557861 (+) False plod3
TU275262 other downstream 39651 585519 ~ 586595 (+) True G185478

Expression Profile