RNA id: XR_006248768.1



Basic Information


Item Value
RNA id XR_006248768.1
length 722
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC122334578
representative True

Chromosome Information


Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 49034 ~ 49788 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aaagatggatggatgttaGACGATGATGCATAGAAAGATGGAAGAAATATGtctggatggatgaatagatggatgcatggaaagatggatggattaaTGGATGATAGATGATTGAAAGATGAAAGACGGCTTATTGCTCTCATGTTGAGTTTCTGTTAATGATAtgcttggtgtgtgtgtgtgtgTTGTTAATCCATCTTAATCAGTGGTCTAGGAAACAGTAATTAGGTAAATGTTGAGATTAAGGAGGATAATGAGGATCTGGACTAAAGTTAGACATCagctgatgacacacacacacacacacacctcttcgTCTGTGTGTTGTGTCAGATGTGAAGATCATTAGTCAACGTCACACATGACCCCAGAAGAGATGAACTCTTATGCGTCACGTTCAAGTGCTCTGACCTCAGAACCAAACATCCCAGGTCCGGAGCGTCTGCTAGCGACAGCAGGGTGTTGGGTTCCAGCCCTGAACGCAGCGCGACTTCTTTTGAGTCAATCCGCCAGATGCACCGTGTGAACGAAGCAAAATGTTTTCGTTTTCCAGTAAACATTTTAGCATTGTTCGTGCAAACAGATGTTGCTTTTTATTCATGCCATTATTTCTGgatattttaaaagccattttctctcattaaaatgtttgtgtatttttgcaaGGTTAAAAGTGGACAGAAAATAAcattcagttcattaaaaaaaacctccaaaaagca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU275024 lncRNA upstream 290 48227 ~ 48744 (+) True G185324
TU275021 lncRNA upstream 2671 45987 ~ 46363 (+) True G185321
TU275018 lncRNA upstream 3965 44279 ~ 45069 (+) True G185318
TU275033 lncRNA downstream 84849 134637 ~ 136258 (+) True G185333
TU275063 lncRNA downstream 88140 137928 ~ 138636 (+) True G185352
TU275048 lncRNA downstream 107156 156944 ~ 158197 (+) True G185345
TU275076 lncRNA downstream 115728 165516 ~ 167319 (+) True G185363
TU275150 lncRNA downstream 152254 202042 ~ 263099 (+) True G185407
XM_043232528.1 mRNA downstream 33541 83329 ~ 92113 (+) True ednrab
XM_043232526.1 mRNA downstream 44976 94764 ~ 102175 (+) False LOC122334533
XM_043232525.1 mRNA downstream 44978 94766 ~ 102175 (+) True LOC122334533
XM_043232530.1 mRNA downstream 72386 122174 ~ 134352 (+) True wu:fy63c09
XM_043232562.1 mRNA downstream 136390 186178 ~ 193997 (+) True LOC122334561
unassigned_transcript_2857 other downstream 1975 51763 ~ 51834 (+) True trnaq-uug_24
TU275141 other downstream 502167 551955 ~ 557861 (+) False plod3
TU275262 other downstream 535731 585519 ~ 586595 (+) True G185478

Expression Profile