RNA id: unassigned_transcript_2857


Basic Information

Item Value
RNA id unassigned_transcript_2857
length 72
RNA type tRNA
GC content 0.51
exon number 1
gene id trnaq-uug_24
representative True

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 51763 ~ 51834 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTcccatggtgtaatggttagcactctggactttgaatccagcgatccgagttcaaatctcggtgggacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248768.1 lncRNA upstream 1975 49034 ~ 49788 (+) True LOC122334578
TU275024 lncRNA upstream 3019 48227 ~ 48744 (+) True G185324
TU275021 lncRNA upstream 5400 45987 ~ 46363 (+) True G185321
TU275018 lncRNA upstream 6694 44279 ~ 45069 (+) True G185318
TU275033 lncRNA downstream 82803 134637 ~ 136258 (+) True G185333
TU275063 lncRNA downstream 86094 137928 ~ 138636 (+) True G185352
TU275048 lncRNA downstream 105110 156944 ~ 158197 (+) True G185345
TU275076 lncRNA downstream 113682 165516 ~ 167319 (+) True G185363
TU275150 lncRNA downstream 150208 202042 ~ 263099 (+) True G185407
XM_043232528.1 mRNA downstream 31495 83329 ~ 92113 (+) True ednrab
XM_043232526.1 mRNA downstream 42930 94764 ~ 102175 (+) False LOC122334533
XM_043232525.1 mRNA downstream 42932 94766 ~ 102175 (+) True LOC122334533
XM_043232530.1 mRNA downstream 70340 122174 ~ 134352 (+) True wu:fy63c09
XM_043232562.1 mRNA downstream 134344 186178 ~ 193997 (+) True LOC122334561
TU275141 other downstream 500121 551955 ~ 557861 (+) False plod3
TU275262 other downstream 533685 585519 ~ 586595 (+) True G185478

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnaq-uug-4 True 72 mRNA 0.44 1 NC_048581.1 45353478 ~ 45353549 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_199 True 72 tRNA 0.51 1 NC_053115.1 12332027 ~ 12332098 (-)
striped catfish (Pangasianodon hypophthalmus) trnaq-uug_2 True 72 tRNA 0.44 1 NC_047605.1 23932866 ~ 23932937 (+)
striped catfish (Pangasianodon hypophthalmus) trnaq-uug_7 False 72 tRNA 0.51 1 NC_047610.1 21354626 ~ 21354697 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_199 True 75 tRNA 0.57 1 NC_056700.1 6038306 ~ 6038380 (+)
mexican tetra (Astyanax mexicanus) trnaq-uug_2 True 72 tRNA 0.51 1 NC_035909.1 37092999 ~ 37093070 (-)
mexican tetra (Astyanax mexicanus) trnaq-uug_7 True 72 tRNA 0.47 1 NW_019171211.1 1981 ~ 2052 (-)