RNA id: TCONS_00010104


Basic Information

Item Value
RNA id TCONS_00010104
length 714
RNA type nonsense_mediated_decay
GC content 0.45
exon number 5
gene id XLOC_005253
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16405598 ~ 16435150 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCCGCTACATCCCTTTTAACAGCCCAAATTCGCTCAAGcctgtttgtaaaaaaaatcaatgcgCGACATCAACACGGACCCATGATGTGTGGAAGGTCTCTCTTAAAGACGTTTAATTACCCATGATGTCATGAAGGACGAGAGGCCAGGGGCCCTTCAGCAAAACGCTGCAGTTGAGCCATAGAGTGTCTGAATCTGCATTCCACTTCATCCTTAAACCATCTGTTCTCCCTTCATCCCCACTTCGGGAACTTGACAATGACATCACATAGGAAACACCTGGTGAGGGACTTCAACCATTTCATCACCTGTTTTGTCTGTAAAGGGTACCTGATCAAGCCCACCACCGTGACAGAGTGCCTGCACACCTTTTGTAAAAGCTGTATTGTCCAGCATTTCGAGGACAGCAACGATTGCCCAAAATGTGGTATCCAGGTTCATGAAACAAATCCCTTGGAGATGTTAAGagaATGGCCCTATGTGTAAGAAACGGCGTGTTGATGAAGAGGATGATGATAAAGGTGATGGAGACTATCACAGAAGTGATCCACAAATAGCCATCTGTCTAGACTGCTTGCGTATCAATGGGCAGATGGGAGAGAACATTGTTAAGGGCTTAATGAAAAAATTTATTCGCTGCTCAACAAGAGTGACTGTTGGAACAATCAAGAAGTTTCTGAGTCTGAAGTTAAAGCTTCCCAGTTCTTATGAG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0036353 histone H2A-K119 monoubiquitination biological_process
GO:0031519 PcG protein complex cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060512-34 Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and muscle. Orthologous to human PCGF5 (polycomb group ring finger 5).

Ensembl:

ensembl_id ENSDART00000152750

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011111 lncRNA downstream 555941 15857732 ~ 15859869 (-) True XLOC_005250
TCONS_00011110 lncRNA downstream 965552 15445574 ~ 15450258 (-) True XLOC_005247
TCONS_00011109 lncRNA downstream 1171810 15242567 ~ 15244000 (-) True XLOC_005246
TCONS_00011108 lncRNA downstream 1289761 15125409 ~ 15126049 (-) True XLOC_005244
TCONS_00011107 lncRNA downstream 1295697 15118453 ~ 15120113 (-) True XLOC_005243
TCONS_00010106 lncRNA upstream 11390 16446228 ~ 16447272 (-) False XLOC_005254
TCONS_00010107 lncRNA upstream 11392 16446230 ~ 16447270 (-) False XLOC_005254
TCONS_00010109 lncRNA upstream 11401 16446239 ~ 16447392 (-) False XLOC_005254
TCONS_00010110 lncRNA upstream 11982 16446820 ~ 16452181 (-) True XLOC_005254
TCONS_00011112 lncRNA upstream 308214 16743052 ~ 16746547 (-) False XLOC_005265
TCONS_00010099 mRNA downstream 34849 16332416 ~ 16380961 (-) False XLOC_005252
TCONS_00010101 mRNA downstream 35217 16378956 ~ 16380593 (-) True XLOC_005252
TCONS_00010100 mRNA downstream 35568 16357238 ~ 16380242 (-) False XLOC_005252
TCONS_00010098 mRNA downstream 330975 16062560 ~ 16084835 (-) True XLOC_005251
TCONS_00010096 mRNA downstream 795720 15568763 ~ 15620090 (-) False XLOC_005249
TCONS_00010108 mRNA upstream 11392 16446230 ~ 16452200 (-) False XLOC_005254
TCONS_00010112 mRNA upstream 87634 16522472 ~ 16524727 (-) True XLOC_005256
TCONS_00010113 mRNA upstream 120765 16555603 ~ 16558106 (-) True XLOC_005257
TCONS_00010115 mRNA upstream 157570 16592408 ~ 16595177 (-) False XLOC_005259
TCONS_00010116 mRNA upstream 157737 16592575 ~ 16595406 (-) True XLOC_005259
TCONS_00010097 other downstream 831278 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010077 other downstream 2765520 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010060 other downstream 4080479 12335216 ~ 12335331 (-) True XLOC_005222
TCONS_00010022 other downstream 6744673 9669927 ~ 9671137 (-) True XLOC_005196
TCONS_00010021 other downstream 6767465 9648228 ~ 9648345 (-) True XLOC_005195
TCONS_00010111 other upstream 58514 16493352 ~ 16493468 (-) True XLOC_005255
TCONS_00010114 other upstream 137357 16572195 ~ 16572309 (-) True XLOC_005258
TCONS_00010117 other upstream 163905 16598743 ~ 16598857 (-) True XLOC_005260
TCONS_00010121 other upstream 219843 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010126 other upstream 308214 16743052 ~ 16746316 (-) False XLOC_005265

Expression Profile

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