RNA id: TCONS_00010107


Basic Information

Item Value
RNA id TCONS_00010107
length 732
lncRNA type retained_intron
GC content 0.35
exon number 4
gene id XLOC_005254
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16446228 ~ 16452200 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTATTGACAGGGGGATTTTCTTTGAGACTTGTTATGCAGCAGCAATCAGAGACTCCATTACAAGGAGATACACCATTGCCAATGCAATCTGCCTAATGGAAATTTGCAAAGGAAAAGTATGTTCTTCCTTTTTACACATAAacttctataatatataataatgtattatgctgattttggatttttttccCTCACAAAAAGAATGTCATAGTGTCCAGTGGAGCAGAAAGGCAACTTGAACTGAGGGGCCCATATGACATTGCCAATTTGGGGCTTGTTTTCAGCTTGTCTGAGGGGGACGCTAAAGCTGCTGTGTCAACTAACTGTCGATCTGTCTTGCTACATGGAGAAACTAGAGCAACTGCATCTGGTGTTATTCACACCATGAAGAAACCACAAATTCTCCAGAAGGAAGAAGAGGAAACTCCGGCTGCCAAAAAAGCCAGAACTGAACTAGCCTAAATAGCATTTCAGCTAGAGTTTTTACTAAatcctgtttgttttttcaaatatatcataatgtaaaacttttttgttACTTCTCAAAGTCTTGcaaatcactttaaaaaatgaaagatgACGCAGatgtgttaaaaatgtattttattagttAAGGTTTAATGGAATTGCAAGCAAAATTTACATATAATAGTACAAAAATTCTTATGTCATATTCTGTACAGACGTCATGCACAAAAAGCACATTCTGTAATAAAGTTTTGGAATATCAAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0008033 tRNA processing biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005840 ribosome cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005655 nucleolar ribonuclease P complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0042393 histone binding molecular_function
GO:0004526 ribonuclease P activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko05169 Epstein-Barr virus infection
ko03009 Ribosome biogenesis
ko03016 Transfer RNA biogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-050320-45 Predicted to enable RNA binding activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic and tRNA processing. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of nucleolar ribonuclease P complex. Orthologous to human RPP30 (ribonuclease P/MRP subunit p30).

Ensembl:

ensembl_id ENSDART00000149679

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011111 lncRNA downstream 586361 15857732 ~ 15859869 (-) True XLOC_005250
TCONS_00011110 lncRNA downstream 995972 15445574 ~ 15450258 (-) True XLOC_005247
TCONS_00011109 lncRNA downstream 1202230 15242567 ~ 15244000 (-) True XLOC_005246
TCONS_00011108 lncRNA downstream 1320181 15125409 ~ 15126049 (-) True XLOC_005244
TCONS_00011107 lncRNA downstream 1326117 15118453 ~ 15120113 (-) True XLOC_005243
TCONS_00011112 lncRNA upstream 295782 16743052 ~ 16746547 (-) False XLOC_005265
TCONS_00011113 lncRNA upstream 491538 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010804 lncRNA upstream 494934 16942204 ~ 16943248 (-) True XLOC_005272
TCONS_00011114 lncRNA upstream 517386 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA upstream 517834 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00010102 mRNA downstream 11080 16405598 ~ 16435150 (-) False XLOC_005253
TCONS_00010099 mRNA downstream 65269 16332416 ~ 16380961 (-) False XLOC_005252
TCONS_00010101 mRNA downstream 65637 16378956 ~ 16380593 (-) True XLOC_005252
TCONS_00010100 mRNA downstream 65988 16357238 ~ 16380242 (-) False XLOC_005252
TCONS_00010098 mRNA downstream 361395 16062560 ~ 16084835 (-) True XLOC_005251
TCONS_00010112 mRNA upstream 75202 16522472 ~ 16524727 (-) True XLOC_005256
TCONS_00010113 mRNA upstream 108333 16555603 ~ 16558106 (-) True XLOC_005257
TCONS_00010115 mRNA upstream 145138 16592408 ~ 16595177 (-) False XLOC_005259
TCONS_00010116 mRNA upstream 145305 16592575 ~ 16595406 (-) True XLOC_005259
TCONS_00010118 mRNA upstream 169868 16617138 ~ 16619757 (-) False XLOC_005261
TCONS_00010104 other downstream 11392 16415810 ~ 16434838 (-) False XLOC_005253
TCONS_00010105 other downstream 11395 16431816 ~ 16434835 (-) True XLOC_005253
TCONS_00010103 other downstream 29473 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010097 other downstream 861698 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010077 other downstream 2795940 13603739 ~ 13650290 (-) True XLOC_005231
TCONS_00010111 other upstream 46082 16493352 ~ 16493468 (-) True XLOC_005255
TCONS_00010114 other upstream 124925 16572195 ~ 16572309 (-) True XLOC_005258
TCONS_00010117 other upstream 151473 16598743 ~ 16598857 (-) True XLOC_005260
TCONS_00010121 other upstream 207411 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010126 other upstream 295782 16743052 ~ 16746316 (-) False XLOC_005265

Expression Profile

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