RNA id: TCONS_00010113


Basic Information

Item Value
RNA id TCONS_00010113
length 1284
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_005257
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16555603 ~ 16558106 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCAATAAGGTTTGTTTGTGAAAGtcctCCAGGCAGGATGATGTTTGCTTTGCTCGTCACGCTGTGCATAAGTGCAGTGTTTGCTGCTTCATCTATAGACATCCAGTTAGATGACCACTGGAACTCCTGGAAGAGCCAGCATGGAAAAAGCTATCATGAGGACGTAGAGGTCGGGAGGAGAATGATTTGGGAGGAGAACTTGAGAAAAATTGAGCAACACAACTTTGAGTATTCCTATGGAAATCACACCTTTAAAATGGGAATGAATCAATTTGGTGACATGACAAATGAGGAGTTCAGACATGCAATGAATGGTTATAAGCATGACCCCAACCAGACGTCACAGGGCCCGTTGTTCATGGAACCCAGCTTTTTTGCAGCCCCACAACAGGTTGACTGGAGACAGAGGGGCTATGTTACTCCTGTCAAAGACCAGAAACAATGTGGATCTTGCTGGTCTTTCAGTTCAACGGGTGCCTTGGAAGGTCAGCTCTTCCGTAAAACTGGAAAGCTGATTTCTATGAGTGAGCAAAACTTGGTGGACTGTTCCAGACCACATGGCAATCAAGGGTGTAATGGAGGCCTCATGGACCAGGCCTTCCAGTATGTTAAAGAAAACAAGGGGCTGGATTCTGAGCAGTCATACCCTTATCTTGCAAGGGATGATCTGCCATGCCGGTATGACCCCCGTTTTAATGTCGCTAAAATCACCGGATTCGTGGACATTCCCAAAGGTAATGAGCTTGCCCTAATGAATGCTGTTGCTGCTGTGGGTCCTGTATCTGTTGCTATTGACGCATCACATCAATCCCTACAGTTCTATCAGTCTGGCATCTATTATGAGAGAGCATGTAGCAGTAGTCGACTTGATCATGCAGTCTTGGTGGTTGGCTATGGTTATCAGGGTGCTGATGTTGCTGGGAATAGATACTGGATTGTGAAGAACAGCTGGTCTGACAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCATTGCGACAATGGCCAGCTATCCCCTAATGTAAGGCCACTGGAGCCTTCTCTGCATTCTGAAAAAGACACGTTTATGGTTTctctattttaatgtgtttttatttcttctaTTTTATCAAATTGTTCTGCTGTTAGGGCTATGATAGTAGTATTTTAGGAAATTCCATTTTTCTTGTGTTTCATATATGCTTGTTTATCCAAGAATGAGAATTCTGTACTGGATCTATTTGACCTGCAAAtggataaatattaaattttctgGCATGG

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-37 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome.

Ensembl:

ensembl_id ENSDART00000109033

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010110 lncRNA downstream 103422 16446820 ~ 16452181 (-) True XLOC_005254
TCONS_00010109 lncRNA downstream 108211 16446239 ~ 16447392 (-) False XLOC_005254
TCONS_00010106 lncRNA downstream 108331 16446228 ~ 16447272 (-) False XLOC_005254
TCONS_00010107 lncRNA downstream 108333 16446230 ~ 16447270 (-) False XLOC_005254
TCONS_00011111 lncRNA downstream 695734 15857732 ~ 15859869 (-) True XLOC_005250
TCONS_00011112 lncRNA upstream 184946 16743052 ~ 16746547 (-) False XLOC_005265
TCONS_00011113 lncRNA upstream 380702 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010804 lncRNA upstream 384098 16942204 ~ 16943248 (-) True XLOC_005272
TCONS_00011114 lncRNA upstream 406550 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA upstream 406998 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00010112 mRNA downstream 30876 16522472 ~ 16524727 (-) True XLOC_005256
TCONS_00010108 mRNA downstream 103403 16446230 ~ 16452200 (-) False XLOC_005254
TCONS_00010102 mRNA downstream 120453 16405598 ~ 16435150 (-) False XLOC_005253
TCONS_00010099 mRNA downstream 174642 16332416 ~ 16380961 (-) False XLOC_005252
TCONS_00010115 mRNA upstream 34302 16592408 ~ 16595177 (-) False XLOC_005259
TCONS_00010116 mRNA upstream 34469 16592575 ~ 16595406 (-) True XLOC_005259
TCONS_00010118 mRNA upstream 59032 16617138 ~ 16619757 (-) False XLOC_005261
TCONS_00010119 mRNA upstream 59034 16617140 ~ 16619449 (-) True XLOC_005261
TCONS_00010120 mRNA upstream 76336 16634442 ~ 16636627 (-) True XLOC_005262
TCONS_00010111 other downstream 62135 16493352 ~ 16493468 (-) True XLOC_005255
TCONS_00010104 other downstream 120765 16415810 ~ 16434838 (-) False XLOC_005253
TCONS_00010105 other downstream 120768 16431816 ~ 16434835 (-) True XLOC_005253
TCONS_00010103 other downstream 138846 16408308 ~ 16416757 (-) False XLOC_005253
TCONS_00010097 other downstream 971071 15581320 ~ 15584532 (-) True XLOC_005249
TCONS_00010114 other upstream 14089 16572195 ~ 16572309 (-) True XLOC_005258
TCONS_00010117 other upstream 40637 16598743 ~ 16598857 (-) True XLOC_005260
TCONS_00010121 other upstream 96575 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010126 other upstream 184946 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010127 other upstream 185176 16743282 ~ 16746547 (-) True XLOC_005265

Expression Profile

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