RNA id: TCONS_00010123


Basic Information

Item Value
RNA id TCONS_00010123
length 1249
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_005264
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16691584 ~ 16720434 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATGATGTTTGCTTTGCTCGTCACGCTGTGCATAAGTGCAGTGTTTGCTGCTTCATCTATAGACATCCAGTTAGACGACCACTGGAACTCCTGGAAGAGCCAGCATGGAAAAAGCTATCATGAGGACGTAGAGGTCGGGAGGAGAATGATTTGGGAGGAGAACTTGAGAAAAATTGAGCAACACAACTTTGAGTATTCCTATGGAAATCACACCTTTAAAATGGGAATGAATCAATTTGGTGACATGACAAATGAGGAGTTCAGACAGGCAATGAATGGTTATAAGCATGACCCCAACCGGACGTCACAGGGCCCGTTGTTCATGGAACCCAGCTTTTTTGCAGCCCCACAACAGGTTGACTGGAGACAGAGGGGCTATGTTACTCCTGTCAAAGACCAGAAACAATGTGGATCTTGCTGGTCTTTCAGTTCAACGGGTGCCTTGGAAGGTCAGCTCTTCCGTAAAACTGGAAAGCTGATTTCTATGAGTGAGCAAAACTTGGTGGACTGTTCCAGACCACAGGGCAATCAAGGGTGTAATGGAGGCATCATGGACCAGGCCTTCCAGTATGTTAAAGAAAACAAGGGGCTGGATTCTGAGCAGTCATACCCTTATCTTGCAAGGGATGATCTGCCATGCCGGTATGACCCCCGTTTTAATGTCGCTAAAATCACCGGATTCGTGGACATCCCCAGAGGTAATGAGCTTGCCCTAATGAATGCTGTTGCTGCTGTGGGTCCTGTATCTGTTGCTATTGACGCATCACATCAATCCCTACAGTTCTATCAGTCTGGCATCTATTATGAGAGAGCATGTAGCAGTAGTCGACTTGATCATGCAGTCTTGGTGGTTGGCTATGGTTATCAGGGTGCTGATGTTGCTGGGAATAGATACTGGATTGTGAAGAACAGCTGGTCTGACAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCGTTGCAACATCGGCCAGCTATCCCCTAATGTAAGGCCACTGGAGCCTTCTCTGCATTCTGAAAAAGACACGTTTATGGTTTctctattttaatgtgtttttatttcttcaattttaTCAAATTGTTCTGCTGTTAGTGCTATGATAGTAGTATTTTAGGAAATTCCATTTTTCTTGTGTTTCATATATTCTTGTTTATGCAAGAATGAGAATTCTGTACTGGATCTATTTGACCTGCAAatggaaaaatataaaattttctgGCATGGC

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-285 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Located in extracellular region. Is expressed in several structures, including hatching gland; hatching gland cell; hypoblast; mesoderm; and swim bladder. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to several human genes including CTSL (cathepsin L).

Ensembl:

ensembl_id ENSDART00000187639

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010110 lncRNA downstream 239405 16446820 ~ 16452181 (-) True XLOC_005254
TCONS_00010109 lncRNA downstream 244194 16446239 ~ 16447392 (-) False XLOC_005254
TCONS_00010106 lncRNA downstream 244314 16446228 ~ 16447272 (-) False XLOC_005254
TCONS_00010107 lncRNA downstream 244316 16446230 ~ 16447270 (-) False XLOC_005254
TCONS_00011111 lncRNA downstream 831717 15857732 ~ 15859869 (-) True XLOC_005250
TCONS_00011112 lncRNA upstream 22856 16743052 ~ 16746547 (-) False XLOC_005265
TCONS_00011113 lncRNA upstream 218612 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010804 lncRNA upstream 222008 16942204 ~ 16943248 (-) True XLOC_005272
TCONS_00011114 lncRNA upstream 244460 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA upstream 244908 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00010120 mRNA downstream 54959 16634442 ~ 16636627 (-) True XLOC_005262
TCONS_00010118 mRNA downstream 71829 16617138 ~ 16619757 (-) False XLOC_005261
TCONS_00010119 mRNA downstream 72137 16617140 ~ 16619449 (-) True XLOC_005261
TCONS_00010116 mRNA downstream 96180 16592575 ~ 16595406 (-) True XLOC_005259
TCONS_00010115 mRNA downstream 96409 16592408 ~ 16595177 (-) False XLOC_005259
TCONS_00010128 mRNA upstream 38776 16758972 ~ 16764751 (-) True XLOC_005266
TCONS_00010129 mRNA upstream 154449 16874645 ~ 16877136 (-) True XLOC_005267
TCONS_00010130 mRNA upstream 175448 16895644 ~ 16898140 (-) True XLOC_005268
TCONS_00010132 mRNA upstream 199215 16919411 ~ 16923162 (-) True XLOC_005270
TCONS_00010133 mRNA upstream 218611 16938807 ~ 16941319 (-) False XLOC_005271
TCONS_00010121 other downstream 36791 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010117 other downstream 92729 16598743 ~ 16598857 (-) True XLOC_005260
TCONS_00010114 other downstream 119277 16572195 ~ 16572309 (-) True XLOC_005258
TCONS_00010111 other downstream 198118 16493352 ~ 16493468 (-) True XLOC_005255
TCONS_00010105 other downstream 256751 16431816 ~ 16434835 (-) True XLOC_005253
TCONS_00010126 other upstream 22856 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010127 other upstream 23086 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010131 other upstream 181449 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010135 other upstream 277010 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010161 other upstream 986596 17706792 ~ 17706901 (-) True XLOC_005289

Expression Profile

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