RNA id: TCONS_00011112


Basic Information

Item Value
RNA id TCONS_00011112
length 1044
lncRNA type inter_gene
GC content 0.46
exon number 8
gene id XLOC_005265
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16743052 ~ 16746547 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCAAAAAGATTTGCTTGCGAAATTCCTCCAGGCAGGATGATGTTTGCTTTGCTCGTCACGCTGTGCATAAGTGCAGTGTTTGCTGCTCCATCTATAGACATCCAGTAAGACGACCACTGGAACTCCTGGAAGAGCCAGCATGGAAAAAGCTATCATGAGGACGTAGAGGTCAAGAGGAGAATGATTTGGGAGGAGAACTTGAGAAAAATTGAGCAACACAACTTTGAGTATTCCTATGGAAATCACACCTTTAAAATGGGAATGAATCAGTTTGGTGACATGACAAATGAGGAGTTCAGACAGGCAATGAATGGTTATAAGCATGACCCCAACCGGACGTCACAGGGCCCGTTGTTCATGGAACCCAGCTTTTTTGCAGCCCCAACAGGTTGACTGGAGACAGAGGGGCTATGTTACTCCTGTCAAAGACCAGAAACAATGTGGATCTTGCTGGTCTTTCAGTTCAACGGGTGCCTTGGAAGGTCAGCTCTTCCGTAAAACTGGAAAGCTGATTTCTATGAGTGAGCAAAACTTGGTGGACTGTTCCAGACCACAGGGCAATCAAGGGTGTAATGGAGGCCTCATGGATCAGGCCTTCCAGTATGTTAAAGAAAACAAGGGGCTGGATTCTGAGCAGTCATACCCTTATCTTGCAAGGGATGATCTGCCATGCCGCTATGACCCCCGTTTTAATGTCGCTAAAATCACCGGATTCGTGGACATCCCCAGAGGTAATGAGCTTGCTCTAATGAATGCTGTTGCTGCTGTGGGTCCTGTATCTGTTGCTATTGACGCATCACATCAATCCCTACAGTTCTATCAGTCTGGCATCTATTATGAGAGAGCATGTACCAGTCGACTTGATCATGCAGTCTTGGTGGTTGGCTATGGTTATCAGGGTGCTGATGTTGCTGGGAATAGATACTGGATTGTGAAGAACAGCTGGTCTGACAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCATTGCGACAATGGCCAGCTATCCCCTAATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010110 lncRNA downstream 290871 16446820 ~ 16452181 (-) True XLOC_005254
TCONS_00010109 lncRNA downstream 295660 16446239 ~ 16447392 (-) False XLOC_005254
TCONS_00010106 lncRNA downstream 295780 16446228 ~ 16447272 (-) False XLOC_005254
TCONS_00010107 lncRNA downstream 295782 16446230 ~ 16447270 (-) False XLOC_005254
TCONS_00011111 lncRNA downstream 883183 15857732 ~ 15859869 (-) True XLOC_005250
TCONS_00011113 lncRNA upstream 192261 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010804 lncRNA upstream 195657 16942204 ~ 16943248 (-) True XLOC_005272
TCONS_00011114 lncRNA upstream 218109 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA upstream 218557 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00010158 lncRNA upstream 950585 17697132 ~ 17698312 (-) True XLOC_005287
TCONS_00010124 mRNA downstream 22618 16717868 ~ 16720434 (-) False XLOC_005264
TCONS_00010125 mRNA downstream 22620 16719407 ~ 16720432 (-) True XLOC_005264
TCONS_00010123 mRNA downstream 22856 16691586 ~ 16720196 (-) False XLOC_005264
TCONS_00010122 mRNA downstream 48960 16691584 ~ 16694092 (-) False XLOC_005264
TCONS_00010120 mRNA downstream 106425 16634442 ~ 16636627 (-) True XLOC_005262
TCONS_00010128 mRNA upstream 12425 16758972 ~ 16764751 (-) True XLOC_005266
TCONS_00010129 mRNA upstream 128098 16874645 ~ 16877136 (-) True XLOC_005267
TCONS_00010130 mRNA upstream 149097 16895644 ~ 16898140 (-) True XLOC_005268
TCONS_00010132 mRNA upstream 172864 16919411 ~ 16923162 (-) True XLOC_005270
TCONS_00010133 mRNA upstream 192260 16938807 ~ 16941319 (-) False XLOC_005271
TCONS_00010121 other downstream 88257 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010117 other downstream 144195 16598743 ~ 16598857 (-) True XLOC_005260
TCONS_00010114 other downstream 170743 16572195 ~ 16572309 (-) True XLOC_005258
TCONS_00010111 other downstream 249584 16493352 ~ 16493468 (-) True XLOC_005255
TCONS_00010104 other downstream 308214 16415810 ~ 16434838 (-) False XLOC_005253
TCONS_00010131 other upstream 155098 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010135 other upstream 250659 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010161 other upstream 960245 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010183 other upstream 1991866 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 3442622 20189169 ~ 20189286 (-) True XLOC_005319

Expression Profile

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