RNA id: TCONS_00011113


Basic Information

Item Value
RNA id TCONS_00011113
length 376
lncRNA type read_through
GC content 0.36
exon number 2
gene id XLOC_005271
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16938807 ~ 16951646 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCCTTTGTCGCAACGCCACAGtgattgtttttgtcttttgccAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCATTGCGACAATGGCCAGCTATCCCCTAATGTAAGGCCACTGGAGCCTTCTCTGCATTCTGAAAAAGACACGTTTATGGTTTctctattttaatgtgtttttatttcttctcttttttatCAAGTTGTTCTGCTGTTAGGGCTATGATAGTAGTATTTTaggaaatttcatttttttttgtgtttcataTATGCTTGTTTATCCAAGAATGAGACTTCTGTACTGTATCTATTTGAcctgcaaatgaataaatattaaattttctgGCATGGCAAA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011112 lncRNA downstream 192261 16743052 ~ 16746547 (-) False XLOC_005265
TCONS_00010110 lncRNA downstream 486627 16446820 ~ 16452181 (-) True XLOC_005254
TCONS_00010109 lncRNA downstream 491416 16446239 ~ 16447392 (-) False XLOC_005254
TCONS_00010106 lncRNA downstream 491536 16446228 ~ 16447272 (-) False XLOC_005254
TCONS_00010107 lncRNA downstream 491538 16446230 ~ 16447270 (-) False XLOC_005254
TCONS_00011114 lncRNA upstream 13010 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA upstream 13458 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00010158 lncRNA upstream 745486 17697132 ~ 17698312 (-) True XLOC_005287
TCONS_00011116 lncRNA upstream 770155 17721801 ~ 17727540 (-) True XLOC_005291
TCONS_00011117 lncRNA upstream 1272888 18224534 ~ 18227730 (-) True XLOC_005295
TCONS_00010132 mRNA downstream 15646 16919411 ~ 16923162 (-) True XLOC_005270
TCONS_00010130 mRNA downstream 40668 16895644 ~ 16898140 (-) True XLOC_005268
TCONS_00010129 mRNA downstream 61672 16874645 ~ 16877136 (-) True XLOC_005267
TCONS_00010128 mRNA downstream 174057 16758972 ~ 16764751 (-) True XLOC_005266
TCONS_00010124 mRNA downstream 218374 16717868 ~ 16720434 (-) False XLOC_005264
TCONS_00010134 mRNA upstream 37474 16989120 ~ 16990896 (-) True XLOC_005274
TCONS_00010136 mRNA upstream 68259 17019905 ~ 17024079 (-) True XLOC_005276
TCONS_00010137 mRNA upstream 74080 17025726 ~ 17028255 (-) True XLOC_005277
TCONS_00010138 mRNA upstream 81848 17033494 ~ 17035339 (-) True XLOC_005278
TCONS_00010139 mRNA upstream 165759 17117405 ~ 17147473 (-) False XLOC_005279
TCONS_00010131 other downstream 37049 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 192261 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010126 other downstream 192492 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010121 other downstream 284013 16654681 ~ 16654795 (-) True XLOC_005263
TCONS_00010117 other downstream 339951 16598743 ~ 16598857 (-) True XLOC_005260
TCONS_00010135 other upstream 45560 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010161 other upstream 755146 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010183 other upstream 1786767 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 3237523 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 3623994 20575640 ~ 20584439 (-) False XLOC_005327

Expression Profile

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